Chen B - Search Results

1

A magnesium-induced triplex pre-organizes the SAM-II riboswitch.

Roy S, Lammert H, Hayes RL, Chen B, LeBlanc R, Dayie TK, Onuchic JN, Sanbonmatsu KY. Roy S, et al. Among authors: chen b. PLoS Comput Biol. 2017 Mar 1;13(3):e1005406. doi: 10.1371/journal.pcbi.1005406. eCollection 2017 Mar. PLoS Comput Biol. 2017. PMID: 28248966 Free PMC article.

2

Multiple conformations of SAM-II riboswitch detected with SAXS and NMR spectroscopy.

Chen B, Zuo X, Wang YX, Dayie TK. Chen B, et al. Nucleic Acids Res. 2012 Apr;40(7):3117-30. doi: 10.1093/nar/gkr1154. Epub 2011 Dec 1. Nucleic Acids Res. 2012. PMID: 22139931 Free PMC article.

3

SAM-II Riboswitch Samples at least Two Conformations in Solution in the Absence of Ligand: Implications for Recognition.

Chen B, LeBlanc R, Dayie TK. Chen B, et al. Angew Chem Int Ed Engl. 2016 Feb 18;55(8):2724-7. doi: 10.1002/anie.201509997. Epub 2016 Jan 21. Angew Chem Int Ed Engl. 2016. PMID: 26800479

4

E88, a new cyclic-di-GMP class I riboswitch aptamer from Clostridium tetani, has a similar fold to the prototypical class I riboswitch, Vc2, but differentially binds to c-di-GMP analogs.

Luo Y, Chen B, Zhou J, Sintim HO, Dayie TK. Luo Y, et al. Among authors: chen b. Mol Biosyst. 2014 Mar 4;10(3):384-90. doi: 10.1039/c3mb70467j. Epub 2014 Jan 16. Mol Biosyst. 2014. PMID: 24430255

5

Modulation of Conformational Equilibria in the S-Adenosylmethionine (SAM) II Riboswitch by SAM, Mg(2+), and Trimethylamine N-Oxide.

McPhie P, Brown P, Chen B, Dayie TK, Minton AP. McPhie P, et al. Among authors: chen b. Biochemistry. 2016 Sep 13;55(36):5010-20. doi: 10.1021/acs.biochem.6b00283. Epub 2016 Sep 2. Biochemistry. 2016. PMID: 27552169

6

Solution NMR readily reveals distinct structural folds and interactions in doubly ¹³C- and ¹⁹F-labeled RNAs.

Becette OB, Zong G, Chen B, Taiwo KM, Case DA, Dayie TK. Becette OB, et al. Among authors: chen b. Sci Adv. 2020 Oct 7;6(41):eabc6572. doi: 10.1126/sciadv.abc6572. Print 2020 Oct. Sci Adv. 2020. PMID: 33028531 Free PMC article.

7

Chemo-enzymatic synthesis of selectively ¹³C/¹⁵N-labeled RNA for NMR structural and dynamics studies.

Alvarado LJ, Longhini AP, LeBlanc RM, Chen B, Kreutz C, Dayie TK. Alvarado LJ, et al. Among authors: chen b. Methods Enzymol. 2014;549:133-62. doi: 10.1016/B978-0-12-801122-5.00007-6. Methods Enzymol. 2014. PMID: 25432748 Free PMC article.

8

Selective 13C labeling of nucleotides for large RNA NMR spectroscopy using an E. coli strain disabled in the TCA cycle.

Thakur CS, Sama JN, Jackson ME, Chen B, Dayie TK. Thakur CS, et al. Among authors: chen b. J Biomol NMR. 2010 Dec;48(4):179-92. doi: 10.1007/s10858-010-9454-4. Epub 2010 Nov 6. J Biomol NMR. 2010. PMID: 21057854 Free PMC article.

9

Biomass production of site selective 13C/15N nucleotides using wild type and a transketolase E. coli mutant for labeling RNA for high resolution NMR.

Thakur CS, Luo Y, Chen B, Eldho NV, Dayie TK. Thakur CS, et al. Among authors: chen b. J Biomol NMR. 2012 Feb;52(2):103-14. doi: 10.1007/s10858-011-9586-1. Epub 2011 Nov 29. J Biomol NMR. 2012. PMID: 22124680 Free PMC article.

10

CCR5 RNA Pseudoknots: Residue and Site-Specific Labeling correlate Internal Motions with microRNA Binding.

Chen B, Longhini AP, Nußbaumer F, Kreutz C, Dinman JD, Dayie TK. Chen B, et al. Chemistry. 2018 Apr 11;24(21):5462-5468. doi: 10.1002/chem.201705948. Epub 2018 Mar 25. Chemistry. 2018. PMID: 29412477 Free PMC article.

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