Best K - Search Results

1

Specificity, Privacy, and Degeneracy in the CD4 T Cell Receptor Repertoire Following Immunization.

Sun Y, Best K, Cinelli M, Heather JM, Reich-Zeliger S, Shifrut E, Friedman N, Shawe-Taylor J, Chain B. Sun Y, et al. Among authors: best k. Front Immunol. 2017 Apr 13;8:430. doi: 10.3389/fimmu.2017.00430. eCollection 2017. Front Immunol. 2017. PMID: 28450864 Free PMC article.

2

Tracking global changes induced in the CD4 T-cell receptor repertoire by immunization with a complex antigen using short stretches of CDR3 protein sequence.

Thomas N, Best K, Cinelli M, Reich-Zeliger S, Gal H, Shifrut E, Madi A, Friedman N, Shawe-Taylor J, Chain B. Thomas N, et al. Among authors: best k. Bioinformatics. 2014 Nov 15;30(22):3181-8. doi: 10.1093/bioinformatics/btu523. Epub 2014 Aug 5. Bioinformatics. 2014. PMID: 25095879 Free PMC article.

3

Immune Tolerance Maintained by Cooperative Interactions between T Cells and Antigen Presenting Cells Shapes a Diverse TCR Repertoire.

Best K, Chain B, Watkins C. Best K, et al. Front Immunol. 2015 Aug 7;6:360. doi: 10.3389/fimmu.2015.00360. eCollection 2015. Front Immunol. 2015. PMID: 26300880 Free PMC article.

4

Dynamic Perturbations of the T-Cell Receptor Repertoire in Chronic HIV Infection and following Antiretroviral Therapy.

Heather JM, Best K, Oakes T, Gray ER, Roe JK, Thomas N, Friedman N, Noursadeghi M, Chain B. Heather JM, et al. Among authors: best k. Front Immunol. 2016 Jan 11;6:644. doi: 10.3389/fimmu.2015.00644. eCollection 2015. Front Immunol. 2016. PMID: 26793190 Free PMC article.

5

The T Cell Response to the Contact Sensitizer Paraphenylenediamine Is Characterized by a Polyclonal Diverse Repertoire of Antigen-Specific Receptors.

Oakes T, Popple AL, Williams J, Best K, Heather JM, Ismail M, Maxwell G, Gellatly N, Dearman RJ, Kimber I, Chain B. Oakes T, et al. Among authors: best k. Front Immunol. 2017 Feb 16;8:162. doi: 10.3389/fimmu.2017.00162. eCollection 2017. Front Immunol. 2017. PMID: 28261218 Free PMC article.

6

Quantitative Characterization of the T Cell Receptor Repertoire of Naïve and Memory Subsets Using an Integrated Experimental and Computational Pipeline Which Is Robust, Economical, and Versatile.

Oakes T, Heather JM, Best K, Byng-Maddick R, Husovsky C, Ismail M, Joshi K, Maxwell G, Noursadeghi M, Riddell N, Ruehl T, Turner CT, Uddin I, Chain B. Oakes T, et al. Among authors: best k. Front Immunol. 2017 Oct 12;8:1267. doi: 10.3389/fimmu.2017.01267. eCollection 2017. Front Immunol. 2017. PMID: 29075258 Free PMC article.

7

T-cell receptor repertoires share a restricted set of public and abundant CDR3 sequences that are associated with self-related immunity.

Madi A, Shifrut E, Reich-Zeliger S, Gal H, Best K, Ndifon W, Chain B, Cohen IR, Friedman N. Madi A, et al. Among authors: best k. Genome Res. 2014 Oct;24(10):1603-12. doi: 10.1101/gr.170753.113. Epub 2014 Jul 14. Genome Res. 2014. PMID: 25024161 Free PMC article.

8

Computational analysis of stochastic heterogeneity in PCR amplification efficiency revealed by single molecule barcoding.

Best K, Oakes T, Heather JM, Shawe-Taylor J, Chain B. Best K, et al. Sci Rep. 2015 Oct 13;5:14629. doi: 10.1038/srep14629. Sci Rep. 2015. PMID: 26459131 Free PMC article.

9

Feature selection using a one dimensional naïve Bayes' classifier increases the accuracy of support vector machine classification of CDR3 repertoires.

Cinelli M, Sun Y, Best K, Heather JM, Reich-Zeliger S, Shifrut E, Friedman N, Shawe-Taylor J, Chain B. Cinelli M, et al. Among authors: best k. Bioinformatics. 2017 Apr 1;33(7):951-955. doi: 10.1093/bioinformatics/btw771. Bioinformatics. 2017. PMID: 28073756 Free PMC article.

10

Pericyte derived chemokines amplify neutrophil recruitment across the cerebrovascular endothelial barrier.

Gil E, Venturini C, Stirling D, Turner C, Tezera LB, Ercoli G, Baker T, Best K, Brown JS, Noursadeghi M. Gil E, et al. Among authors: best k. Front Immunol. 2022 Jul 28;13:935798. doi: 10.3389/fimmu.2022.935798. eCollection 2022. Front Immunol. 2022. PMID: 35967327 Free PMC article.

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