Shawe-Taylor J - Search Results

1

Specificity, Privacy, and Degeneracy in the CD4 T Cell Receptor Repertoire Following Immunization.

Sun Y, Best K, Cinelli M, Heather JM, Reich-Zeliger S, Shifrut E, Friedman N, Shawe-Taylor J, Chain B. Sun Y, et al. Front Immunol. 2017 Apr 13;8:430. doi: 10.3389/fimmu.2017.00430. eCollection 2017. Front Immunol. 2017. PMID: 28450864 Free PMC article.

2

Tracking global changes induced in the CD4 T-cell receptor repertoire by immunization with a complex antigen using short stretches of CDR3 protein sequence.

Thomas N, Best K, Cinelli M, Reich-Zeliger S, Gal H, Shifrut E, Madi A, Friedman N, Shawe-Taylor J, Chain B. Thomas N, et al. Bioinformatics. 2014 Nov 15;30(22):3181-8. doi: 10.1093/bioinformatics/btu523. Epub 2014 Aug 5. Bioinformatics. 2014. PMID: 25095879 Free PMC article.

3

Computational analysis of stochastic heterogeneity in PCR amplification efficiency revealed by single molecule barcoding.

Best K, Oakes T, Heather JM, Shawe-Taylor J, Chain B. Best K, et al. Sci Rep. 2015 Oct 13;5:14629. doi: 10.1038/srep14629. Sci Rep. 2015. PMID: 26459131 Free PMC article.

4

Feature selection using a one dimensional naïve Bayes' classifier increases the accuracy of support vector machine classification of CDR3 repertoires.

Cinelli M, Sun Y, Best K, Heather JM, Reich-Zeliger S, Shifrut E, Friedman N, Shawe-Taylor J, Chain B. Cinelli M, et al. Bioinformatics. 2017 Apr 1;33(7):951-955. doi: 10.1093/bioinformatics/btw771. Bioinformatics. 2017. PMID: 28073756 Free PMC article.

5

Predicting T Cell Receptor Antigen Specificity From Structural Features Derived From Homology Models of Receptor-Peptide-Major Histocompatibility Complexes.

Milighetti M, Shawe-Taylor J, Chain B. Milighetti M, et al. Among authors: shawe taylor j. Front Physiol. 2021 Sep 8;12:730908. doi: 10.3389/fphys.2021.730908. eCollection 2021. Front Physiol. 2021. PMID: 34566692 Free PMC article.

6

Corrigendum: Predicting T Cell Receptor Antigen Specificity From Structural Features Derived From Homology Models of Receptor-Peptide-Major Histocompatibility Complexes.

Milighetti M, Shawe-Taylor J, Chain B. Milighetti M, et al. Among authors: shawe taylor j. Front Physiol. 2022 Jan 24;12:790998. doi: 10.3389/fphys.2021.790998. eCollection 2021. Front Physiol. 2022. PMID: 35140630 Free PMC article.

7

Decombinator: a tool for fast, efficient gene assignment in T-cell receptor sequences using a finite state machine.

Thomas N, Heather J, Ndifon W, Shawe-Taylor J, Chain B. Thomas N, et al. Bioinformatics. 2013 Mar 1;29(5):542-50. doi: 10.1093/bioinformatics/btt004. Epub 2013 Jan 9. Bioinformatics. 2013. PMID: 23303508

8

Directional migration of recirculating lymphocytes through lymph nodes via random walks.

Thomas N, Matejovicova L, Srikusalanukul W, Shawe-Taylor J, Chain B. Thomas N, et al. PLoS One. 2012;7(9):e45262. doi: 10.1371/journal.pone.0045262. Epub 2012 Sep 20. PLoS One. 2012. PMID: 23028891 Free PMC article.

9

The immune system as a biomonitor: explorations in innate and adaptive immunity.

Thomas N, Heather J, Pollara G, Simpson N, Matjeka T, Shawe-Taylor J, Noursadeghi M, Chain B. Thomas N, et al. Interface Focus. 2013 Apr 6;3(2):20120099. doi: 10.1098/rsfs.2012.0099. Interface Focus. 2013. PMID: 24427535 Free PMC article.

10

Network topological determinants of pathogen spread.

Pérez-Ortiz M, Manescu P, Caccioli F, Fernández-Reyes D, Nachev P, Shawe-Taylor J. Pérez-Ortiz M, et al. Among authors: shawe taylor j. Sci Rep. 2022 May 11;12(1):7692. doi: 10.1038/s41598-022-11786-5. Sci Rep. 2022. PMID: 35545647 Free PMC article.

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