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Genome-scale modeling for metabolic engineering.
Simeonidis E, Price ND. Simeonidis E, et al. J Ind Microbiol Biotechnol. 2015 Mar;42(3):327-38. doi: 10.1007/s10295-014-1576-3. Epub 2015 Jan 13. J Ind Microbiol Biotechnol. 2015. PMID: 25578304 Free PMC article. Review.
MediaDB: a database of microbial growth conditions in defined media.
Richards MA, Cassen V, Heavner BD, Ajami NE, Herrmann A, Simeonidis E, Price ND. Richards MA, et al. Among authors: simeonidis e. PLoS One. 2014 Aug 6;9(8):e103548. doi: 10.1371/journal.pone.0103548. eCollection 2014. PLoS One. 2014. PMID: 25098325 Free PMC article.
A model of yeast glycolysis based on a consistent kinetic characterisation of all its enzymes.
Smallbone K, Messiha HL, Carroll KM, Winder CL, Malys N, Dunn WB, Murabito E, Swainston N, Dada JO, Khan F, Pir P, Simeonidis E, Spasić I, Wishart J, Weichart D, Hayes NW, Jameson D, Broomhead DS, Oliver SG, Gaskell SJ, McCarthy JE, Paton NW, Westerhoff HV, Kell DB, Mendes P. Smallbone K, et al. Among authors: simeonidis e. FEBS Lett. 2013 Sep 2;587(17):2832-41. doi: 10.1016/j.febslet.2013.06.043. Epub 2013 Jul 4. FEBS Lett. 2013. PMID: 23831062 Free PMC article.
A community-driven global reconstruction of human metabolism.
Thiele I, Swainston N, Fleming RM, Hoppe A, Sahoo S, Aurich MK, Haraldsdottir H, Mo ML, Rolfsson O, Stobbe MD, Thorleifsson SG, Agren R, Bölling C, Bordel S, Chavali AK, Dobson P, Dunn WB, Endler L, Hala D, Hucka M, Hull D, Jameson D, Jamshidi N, Jonsson JJ, Juty N, Keating S, Nookaew I, Le Novère N, Malys N, Mazein A, Papin JA, Price ND, Selkov E Sr, Sigurdsson MI, Simeonidis E, Sonnenschein N, Smallbone K, Sorokin A, van Beek JH, Weichart D, Goryanin I, Nielsen J, Westerhoff HV, Kell DB, Mendes P, Palsson BØ. Thiele I, et al. Among authors: simeonidis e. Nat Biotechnol. 2013 May;31(5):419-25. doi: 10.1038/nbt.2488. Epub 2013 Mar 3. Nat Biotechnol. 2013. PMID: 23455439 Free PMC article.
Why does yeast ferment? A flux balance analysis study.
Simeonidis E, Murabito E, Smallbone K, Westerhoff HV. Simeonidis E, et al. Biochem Soc Trans. 2010 Oct;38(5):1225-9. doi: 10.1042/BST0381225. Biochem Soc Trans. 2010. PMID: 20863289
29 results