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Page 1
Wild tobacco genomes reveal the evolution of nicotine biosynthesis.
Xu S, Brockmöller T, Navarro-Quezada A, Kuhl H, Gase K, Ling Z, Zhou W, Kreitzer C, Stanke M, Tang H, Lyons E, Pandey P, Pandey SP, Timmermann B, Gaquerel E, Baldwin IT. Xu S, et al. Among authors: stanke m. Proc Natl Acad Sci U S A. 2017 Jun 6;114(23):6133-6138. doi: 10.1073/pnas.1700073114. Epub 2017 May 23. Proc Natl Acad Sci U S A. 2017. PMID: 28536194 Free PMC article.
Gene transfer from bacteria and archaea facilitated evolution of an extremophilic eukaryote.
Schönknecht G, Chen WH, Ternes CM, Barbier GG, Shrestha RP, Stanke M, Bräutigam A, Baker BJ, Banfield JF, Garavito RM, Carr K, Wilkerson C, Rensing SA, Gagneul D, Dickenson NE, Oesterhelt C, Lercher MJ, Weber AP. Schönknecht G, et al. Among authors: stanke m. Science. 2013 Mar 8;339(6124):1207-10. doi: 10.1126/science.1231707. Science. 2013. PMID: 23471408
Insights into evolution of multicellular fungi from the assembled chromosomes of the mushroom Coprinopsis cinerea (Coprinus cinereus).
Stajich JE, Wilke SK, Ahrén D, Au CH, Birren BW, Borodovsky M, Burns C, Canbäck B, Casselton LA, Cheng CK, Deng J, Dietrich FS, Fargo DC, Farman ML, Gathman AC, Goldberg J, Guigó R, Hoegger PJ, Hooker JB, Huggins A, James TY, Kamada T, Kilaru S, Kodira C, Kües U, Kupfer D, Kwan HS, Lomsadze A, Li W, Lilly WW, Ma LJ, Mackey AJ, Manning G, Martin F, Muraguchi H, Natvig DO, Palmerini H, Ramesh MA, Rehmeyer CJ, Roe BA, Shenoy N, Stanke M, Ter-Hovhannisyan V, Tunlid A, Velagapudi R, Vision TJ, Zeng Q, Zolan ME, Pukkila PJ. Stajich JE, et al. Among authors: stanke m. Proc Natl Acad Sci U S A. 2010 Jun 29;107(26):11889-94. doi: 10.1073/pnas.1003391107. Epub 2010 Jun 14. Proc Natl Acad Sci U S A. 2010. PMID: 20547848 Free PMC article.
Discovery and revision of Arabidopsis genes by proteogenomics.
Castellana NE, Payne SH, Shen Z, Stanke M, Bafna V, Briggs SP. Castellana NE, et al. Among authors: stanke m. Proc Natl Acad Sci U S A. 2008 Dec 30;105(52):21034-8. doi: 10.1073/pnas.0811066106. Epub 2008 Dec 19. Proc Natl Acad Sci U S A. 2008. PMID: 19098097 Free PMC article.
Simultaneous gene finding in multiple genomes.
König S, Romoth LW, Gerischer L, Stanke M. König S, et al. Among authors: stanke m. Bioinformatics. 2016 Nov 15;32(22):3388-3395. doi: 10.1093/bioinformatics/btw494. Epub 2016 Jul 27. Bioinformatics. 2016. PMID: 27466621 Free PMC article.
The house spider genome reveals an ancient whole-genome duplication during arachnid evolution.
Schwager EE, Sharma PP, Clarke T, Leite DJ, Wierschin T, Pechmann M, Akiyama-Oda Y, Esposito L, Bechsgaard J, Bilde T, Buffry AD, Chao H, Dinh H, Doddapaneni H, Dugan S, Eibner C, Extavour CG, Funch P, Garb J, Gonzalez LB, Gonzalez VL, Griffiths-Jones S, Han Y, Hayashi C, Hilbrant M, Hughes DST, Janssen R, Lee SL, Maeso I, Murali SC, Muzny DM, Nunes da Fonseca R, Paese CLB, Qu J, Ronshaugen M, Schomburg C, Schönauer A, Stollewerk A, Torres-Oliva M, Turetzek N, Vanthournout B, Werren JH, Wolff C, Worley KC, Bucher G, Gibbs RA, Coddington J, Oda H, Stanke M, Ayoub NA, Prpic NM, Flot JF, Posnien N, Richards S, McGregor AP. Schwager EE, et al. Among authors: stanke m. BMC Biol. 2017 Jul 31;15(1):62. doi: 10.1186/s12915-017-0399-x. BMC Biol. 2017. PMID: 28756775 Free PMC article.
Predicting Genes in Single Genomes with AUGUSTUS.
Hoff KJ, Stanke M. Hoff KJ, et al. Among authors: stanke m. Curr Protoc Bioinformatics. 2019 Mar;65(1):e57. doi: 10.1002/cpbi.57. Epub 2018 Nov 22. Curr Protoc Bioinformatics. 2019. PMID: 30466165
Repeat associated mechanisms of genome evolution and function revealed by the Mus caroli and Mus pahari genomes.
Thybert D, Roller M, Navarro FCP, Fiddes I, Streeter I, Feig C, Martin-Galvez D, Kolmogorov M, Janoušek V, Akanni W, Aken B, Aldridge S, Chakrapani V, Chow W, Clarke L, Cummins C, Doran A, Dunn M, Goodstadt L, Howe K, Howell M, Josselin AA, Karn RC, Laukaitis CM, Jingtao L, Martin F, Muffato M, Nachtweide S, Quail MA, Sisu C, Stanke M, Stefflova K, Van Oosterhout C, Veyrunes F, Ward B, Yang F, Yazdanifar G, Zadissa A, Adams DJ, Brazma A, Gerstein M, Paten B, Pham S, Keane TM, Odom DT, Flicek P. Thybert D, et al. Among authors: stanke m. Genome Res. 2018 Apr;28(4):448-459. doi: 10.1101/gr.234096.117. Epub 2018 Mar 21. Genome Res. 2018. PMID: 29563166 Free PMC article.
Whole-Genome Annotation with BRAKER.
Hoff KJ, Lomsadze A, Borodovsky M, Stanke M. Hoff KJ, et al. Among authors: stanke m. Methods Mol Biol. 2019;1962:65-95. doi: 10.1007/978-1-4939-9173-0_5. Methods Mol Biol. 2019. PMID: 31020555 Free PMC article.
119 results