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HIV-1 full-genome phylogenetics of generalized epidemics in sub-Saharan Africa: impact of missing nucleotide characters in next-generation sequences.
Ratmann O, Wymant C, Colijn C, Danaviah S, Essex M, Frost SDW, Gall A, Gaiseitsiwe S, Grabowski M, Gray R, Guindon S, von Haeseler A, Kaleebu P, Kendall M, Kozlov A, Manasa J, Minh BQ, Moyo S, Novitsky V, Nsubuga R, Pillay S, Quinn TC, Serwadda D, Ssemwanga D, Stamatakis A, Trifinopoulos J, Wawer M, Leigh Brown A, de Oliveira T, Kellam P, Pillay D, Fraser C. Ratmann O, et al. Among authors: guindon s. AIDS Res Hum Retroviruses. 2017 Nov;33(11):1083-1098. doi: 10.1089/AID.2017.0061. Epub 2017 May 25. AIDS Res Hum Retroviruses. 2017. PMID: 28540766 Free PMC article.
Performance of standard and stochastic branch-site models for detecting positive selection among coding sequences.
Lu A, Guindon S. Lu A, et al. Among authors: guindon s. Mol Biol Evol. 2014 Feb;31(2):484-95. doi: 10.1093/molbev/mst198. Epub 2013 Oct 16. Mol Biol Evol. 2014. PMID: 24132121
This model relies on prior knowledge of the (foreground) lineage(s) evolving under positive selection at some sites. Unfortunately, such prior information is not always available in practice. A more recent technique (Guindon S, Rodrigo A, Dyer K, Huelsenbeck …
This model relies on prior knowledge of the (foreground) lineage(s) evolving under positive selection at some sites. Unfortunately, s …
Molecular Evolution of the TET Gene Family in Mammals.
Akahori H, Guindon S, Yoshizaki S, Muto Y. Akahori H, et al. Among authors: guindon s. Int J Mol Sci. 2015 Dec 1;16(12):28472-85. doi: 10.3390/ijms161226110. Int J Mol Sci. 2015. PMID: 26633372 Free PMC article.
Viral quasi-species evolution during hepatitis Be antigen seroconversion.
Lim SG, Cheng Y, Guindon S, Seet BL, Lee LY, Hu P, Wasser S, Peter FJ, Tan T, Goode M, Rodrigo AG. Lim SG, et al. Among authors: guindon s. Gastroenterology. 2007 Sep;133(3):951-8. doi: 10.1053/j.gastro.2007.06.011. Epub 2007 Jun 20. Gastroenterology. 2007. PMID: 17854598
317 results