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HIV-1 full-genome phylogenetics of generalized epidemics in sub-Saharan Africa: impact of missing nucleotide characters in next-generation sequences.
Ratmann O, Wymant C, Colijn C, Danaviah S, Essex M, Frost SDW, Gall A, Gaiseitsiwe S, Grabowski M, Gray R, Guindon S, von Haeseler A, Kaleebu P, Kendall M, Kozlov A, Manasa J, Minh BQ, Moyo S, Novitsky V, Nsubuga R, Pillay S, Quinn TC, Serwadda D, Ssemwanga D, Stamatakis A, Trifinopoulos J, Wawer M, Leigh Brown A, de Oliveira T, Kellam P, Pillay D, Fraser C. Ratmann O, et al. Among authors: von haeseler a. AIDS Res Hum Retroviruses. 2017 Nov;33(11):1083-1098. doi: 10.1089/AID.2017.0061. Epub 2017 May 25. AIDS Res Hum Retroviruses. 2017. PMID: 28540766 Free PMC article.
Phylogenetic diversity within seconds.
Minh BQ, Klaere S, von Haeseler A. Minh BQ, et al. Among authors: von haeseler a. Syst Biol. 2006 Oct;55(5):769-73. doi: 10.1080/10635150600981604. Syst Biol. 2006. PMID: 17060198
Budgeted phylogenetic diversity on circular split systems.
Minh BQ, Pardi F, Klaere S, von Haeseler A. Minh BQ, et al. Among authors: von haeseler a. IEEE/ACM Trans Comput Biol Bioinform. 2009 Jan-Mar;6(1):22-9. doi: 10.1109/TCBB.2008.54. IEEE/ACM Trans Comput Biol Bioinform. 2009. PMID: 19179696
Taxon Selection under Split Diversity.
Minh BQ, Klaere S, von Haeseler A. Minh BQ, et al. Among authors: von haeseler a. Syst Biol. 2009 Dec;58(6):586-94. doi: 10.1093/sysbio/syp058. Epub 2009 Sep 21. Syst Biol. 2009. PMID: 20525611
Ultrafast approximation for phylogenetic bootstrap.
Minh BQ, Nguyen MA, von Haeseler A. Minh BQ, et al. Among authors: von haeseler a. Mol Biol Evol. 2013 May;30(5):1188-95. doi: 10.1093/molbev/mst024. Epub 2013 Feb 15. Mol Biol Evol. 2013. PMID: 23418397 Free PMC article.
Decisive data sets in phylogenomics: lessons from studies on the phylogenetic relationships of primarily wingless insects.
Dell'Ampio E, Meusemann K, Szucsich NU, Peters RS, Meyer B, Borner J, Petersen M, Aberer AJ, Stamatakis A, Walzl MG, Minh BQ, von Haeseler A, Ebersberger I, Pass G, Misof B. Dell'Ampio E, et al. Among authors: von haeseler a. Mol Biol Evol. 2014 Jan;31(1):239-49. doi: 10.1093/molbev/mst196. Epub 2013 Oct 18. Mol Biol Evol. 2014. PMID: 24140757 Free PMC article.
The phylogenetic likelihood library.
Flouri T, Izquierdo-Carrasco F, Darriba D, Aberer AJ, Nguyen LT, Minh BQ, Von Haeseler A, Stamatakis A. Flouri T, et al. Among authors: von haeseler a. Syst Biol. 2015 Mar;64(2):356-62. doi: 10.1093/sysbio/syu084. Epub 2014 Oct 30. Syst Biol. 2015. PMID: 25358969 Free PMC article.
180 results