Soysal E - Search Results

1

Finding useful data across multiple biomedical data repositories using DataMed.

Ohno-Machado L, Sansone SA, Alter G, Fore I, Grethe J, Xu H, Gonzalez-Beltran A, Rocca-Serra P, Gururaj AE, Bell E, Soysal E, Zong N, Kim HE. Ohno-Machado L, et al. Among authors: soysal e. Nat Genet. 2017 May 26;49(6):816-819. doi: 10.1038/ng.3864. Nat Genet. 2017. PMID: 28546571 Free PMC article.

2

DataMed - an open source discovery index for finding biomedical datasets.

Chen X, Gururaj AE, Ozyurt B, Liu R, Soysal E, Cohen T, Tiryaki F, Li Y, Zong N, Jiang M, Rogith D, Salimi M, Kim HE, Rocca-Serra P, Gonzalez-Beltran A, Farcas C, Johnson T, Margolis R, Alter G, Sansone SA, Fore IM, Ohno-Machado L, Grethe JS, Xu H. Chen X, et al. Among authors: soysal e. J Am Med Inform Assoc. 2018 Mar 1;25(3):300-308. doi: 10.1093/jamia/ocx121. J Am Med Inform Assoc. 2018. PMID: 29346583 Free PMC article.

3

Leveraging syntactic and semantic graph kernels to extract pharmacokinetic drug drug interactions from biomedical literature.

Zhang Y, Wu HY, Xu J, Wang J, Soysal E, Li L, Xu H. Zhang Y, et al. Among authors: soysal e. BMC Syst Biol. 2016 Aug 26;10 Suppl 3(Suppl 3):67. doi: 10.1186/s12918-016-0311-2. BMC Syst Biol. 2016. PMID: 27585838 Free PMC article.

4

Development of a Natural Language Processing Tool to Extract Radiation Treatment Sites.

Walker G, Soysal E, Xu H. Walker G, et al. Among authors: soysal e. Cureus. 2019 Oct 28;11(10):e6010. doi: 10.7759/cureus.6010. Cureus. 2019. PMID: 31815074 Free PMC article.

5

Integrating Multiple On-line Knowledge Bases for Disease-Lab Test Relation Extraction.

Zhang Y, Soysal E, Moon S, Wang J, Tao C, Xu H. Zhang Y, et al. Among authors: soysal e. AMIA Jt Summits Transl Sci Proc. 2015 Mar 25;2015:204-8. eCollection 2015. AMIA Jt Summits Transl Sci Proc. 2015. PMID: 26306271 Free PMC article.

6

Identifying Metastases-related Information from Pathology Reports of Lung Cancer Patients.

Soysal E, Warner JL, Denny JC, Xu H. Soysal E, et al. AMIA Jt Summits Transl Sci Proc. 2017 Jul 26;2017:268-277. eCollection 2017. AMIA Jt Summits Transl Sci Proc. 2017. PMID: 28815141 Free PMC article.

7

CATTLE (CAncer treatment treasury with linked evidence): An integrated knowledge base for personalized oncology research and practice.

Soysal E, Lee HJ, Zhang Y, Huang LC, Chen X, Wei Q, Zheng W, Chang JT, Cohen T, Sun J, Xu H. Soysal E, et al. CPT Pharmacometrics Syst Pharmacol. 2017 Mar;6(3):188-196. doi: 10.1002/psp4.12174. Epub 2017 Mar 13. CPT Pharmacometrics Syst Pharmacol. 2017. PMID: 28296354 Free PMC article.

8

CLAMP - a toolkit for efficiently building customized clinical natural language processing pipelines.

Soysal E, Wang J, Jiang M, Wu Y, Pakhomov S, Liu H, Xu H. Soysal E, et al. J Am Med Inform Assoc. 2018 Mar 1;25(3):331-336. doi: 10.1093/jamia/ocx132. J Am Med Inform Assoc. 2018. PMID: 29186491 Free PMC article.

9

A weighted and integrated drug-target interactome: drug repurposing for schizophrenia as a use case.

Huang LC, Soysal E, Zheng W, Zhao Z, Xu H, Sun J. Huang LC, et al. Among authors: soysal e. BMC Syst Biol. 2015;9 Suppl 4(Suppl 4):S2. doi: 10.1186/1752-0509-9-S4-S2. Epub 2015 Jun 11. BMC Syst Biol. 2015. PMID: 26100720 Free PMC article.

10

A long journey to short abbreviations: developing an open-source framework for clinical abbreviation recognition and disambiguation (CARD).

Wu Y, Denny JC, Trent Rosenbloom S, Miller RA, Giuse DA, Wang L, Blanquicett C, Soysal E, Xu J, Xu H. Wu Y, et al. Among authors: soysal e. J Am Med Inform Assoc. 2017 Apr 1;24(e1):e79-e86. doi: 10.1093/jamia/ocw109. J Am Med Inform Assoc. 2017. PMID: 27539197 Free PMC article.

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