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Young inversion with multiple linked QTLs under selection in a hybrid zone.
Lee CR, Wang B, Mojica JP, Mandáková T, Prasad KVSK, Goicoechea JL, Perera N, Hellsten U, Hundley HN, Johnson J, Grimwood J, Barry K, Fairclough S, Jenkins JW, Yu Y, Kudrna D, Zhang J, Talag J, Golser W, Ghattas K, Schranz ME, Wing R, Lysak MA, Schmutz J, Rokhsar DS, Mitchell-Olds T. Lee CR, et al. Among authors: johnson j. Nat Ecol Evol. 2017 Apr 3;1(5):119. doi: 10.1038/s41559-017-0119. Nat Ecol Evol. 2017. PMID: 28812690 Free PMC article.
Genome-wide analysis of lectin receptor-like kinases in Populus.
Yang Y, Labbé J, Muchero W, Yang X, Jawdy SS, Kennedy M, Johnson J, Sreedasyam A, Schmutz J, Tuskan GA, Chen JG. Yang Y, et al. Among authors: johnson j. BMC Genomics. 2016 Sep 1;17(1):699. doi: 10.1186/s12864-016-3026-2. BMC Genomics. 2016. PMID: 27580945 Free PMC article.
Publisher correction: Young inversion with multiple linked QTLs under selection in a hybrid zone.
Lee CR, Wang B, Mojica JP, Mandáková T, Prasad KVSK, Luis Goicoechea J, Perera N, Hellsten U, Hundley HN, Johnson J, Grimwood J, Barry K, Fairclough S, Jenkins JW, Yu Y, Kudrna D, Zhang J, Talag J, Golser W, Ghattas K, Schranz ME, Wing R, Lysak MA, Schmutz J, Rokhsar DS, Mitchell-Olds T. Lee CR, et al. Among authors: johnson j. Nat Ecol Evol. 2017 Oct;1(10):1585. doi: 10.1038/s41559-017-0310-8. Nat Ecol Evol. 2017. PMID: 29185503
Defining the eco-enzymological role of the fungal strain Coniochaeta sp. 2T2.1 in a tripartite lignocellulolytic microbial consortium.
Jiménez DJ, Wang Y, Chaib de Mares M, Cortes-Tolalpa L, Mertens JA, Hector RE, Lin J, Johnson J, Lipzen A, Barry K, Mondo SJ, Grigoriev IV, Nichols NN, van Elsas JD. Jiménez DJ, et al. Among authors: johnson j. FEMS Microbiol Ecol. 2020 Jan 1;96(1):fiz186. doi: 10.1093/femsec/fiz186. FEMS Microbiol Ecol. 2020. PMID: 31769802
A genome resource for green millet Setaria viridis enables discovery of agronomically valuable loci.
Mamidi S, Healey A, Huang P, Grimwood J, Jenkins J, Barry K, Sreedasyam A, Shu S, Lovell JT, Feldman M, Wu J, Yu Y, Chen C, Johnson J, Sakakibara H, Kiba T, Sakurai T, Tavares R, Nusinow DA, Baxter I, Schmutz J, Brutnell TP, Kellogg EA. Mamidi S, et al. Among authors: johnson j. Nat Biotechnol. 2020 Oct;38(10):1203-1210. doi: 10.1038/s41587-020-0681-2. Epub 2020 Oct 5. Nat Biotechnol. 2020. PMID: 33020633 Free PMC article.
JGI Plant Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the plant kingdom.
Sreedasyam A, Plott C, Hossain MS, Lovell JT, Grimwood J, Jenkins JW, Daum C, Barry K, Carlson J, Shu S, Phillips J, Amirebrahimi M, Zane M, Wang M, Goodstein D, Haas FB, Hiss M, Perroud PF, Jawdy SS, Yang Y, Hu R, Johnson J, Kropat J, Gallaher SD, Lipzen A, Shakirov EV, Weng X, Torres-Jerez I, Weers B, Conde D, Pappas MR, Liu L, Muchlinski A, Jiang H, Shyu C, Huang P, Sebastian J, Laiben C, Medlin A, Carey S, Carrell AA, Chen JG, Perales M, Swaminathan K, Allona I, Grattapaglia D, Cooper EA, Tholl D, Vogel JP, Weston DJ, Yang X, Brutnell TP, Kellogg EA, Baxter I, Udvardi M, Tang Y, Mockler TC, Juenger TE, Mullet J, Rensing SA, Tuskan GA, Merchant SS, Stacey G, Schmutz J. Sreedasyam A, et al. Among authors: johnson j. Nucleic Acids Res. 2023 Sep 8;51(16):8383-8401. doi: 10.1093/nar/gkad616. Nucleic Acids Res. 2023. PMID: 37526283 Free PMC article.
Evolutionary innovations through gain and loss of genes in the ectomycorrhizal Boletales.
Wu G, Miyauchi S, Morin E, Kuo A, Drula E, Varga T, Kohler A, Feng B, Cao Y, Lipzen A, Daum C, Hundley H, Pangilinan J, Johnson J, Barry K, LaButti K, Ng V, Ahrendt S, Min B, Choi IG, Park H, Plett JM, Magnuson J, Spatafora JW, Nagy LG, Henrissat B, Grigoriev IV, Yang ZL, Xu J, Martin FM. Wu G, et al. Among authors: johnson j. New Phytol. 2022 Feb;233(3):1383-1400. doi: 10.1111/nph.17858. Epub 2021 Dec 9. New Phytol. 2022. PMID: 34767630 Free article.
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