Sayar M - Search Results

1

A multi-state coarse grained modeling approach for an intrinsically disordered peptide.

Ramezanghorbani F, Dalgicdir C, Sayar M. Ramezanghorbani F, et al. Among authors: sayar m. J Chem Phys. 2017 Sep 7;147(9):094103. doi: 10.1063/1.5001087. J Chem Phys. 2017. PMID: 28886645

2

Tipping the Scale from Disorder to Alpha-helix: Folding of Amphiphilic Peptides in the Presence of Macroscopic and Molecular Interfaces.

Dalgicdir C, Globisch C, Peter C, Sayar M. Dalgicdir C, et al. Among authors: sayar m. PLoS Comput Biol. 2015 Aug 21;11(8):e1004328. doi: 10.1371/journal.pcbi.1004328. eCollection 2015 Aug. PLoS Comput Biol. 2015. PMID: 26295346 Free PMC article.

3

Conformation and Aggregation of LKα14 Peptide in Bulk Water and at the Air/Water Interface.

Dalgicdir C, Sayar M. Dalgicdir C, et al. Among authors: sayar m. J Phys Chem B. 2015 Dec 10;119(49):15164-75. doi: 10.1021/acs.jpcb.5b08871. Epub 2015 Nov 24. J Phys Chem B. 2015. PMID: 26551581

4

A transferable coarse-grained model for diphenylalanine: how to represent an environment driven conformational transition.

Dalgicdir C, Sensoy O, Peter C, Sayar M. Dalgicdir C, et al. Among authors: sayar m. J Chem Phys. 2013 Dec 21;139(23):234115. doi: 10.1063/1.4848675. J Chem Phys. 2013. PMID: 24359360

5

Representation of the conformational ensemble of peptides in coarse grained simulations.

Ozgur B, Sayar M. Ozgur B, et al. Among authors: sayar m. J Chem Phys. 2020 Aug 7;153(5):054108. doi: 10.1063/5.0012391. J Chem Phys. 2020. PMID: 32770883

6

Correction to "Conformation and Aggregation of LKα14 Peptide in Bulk Water and at the Air/Water Interface".

Ozgur B, Dalgicdir C, Sayar M. Ozgur B, et al. Among authors: sayar m. J Phys Chem B. 2019 Mar 14;123(10):2463-2465. doi: 10.1021/acs.jpcb.9b01566. Epub 2019 Mar 5. J Phys Chem B. 2019. PMID: 30835468 No abstract available.

7

Twist-writhe partitioning in a coarse-grained DNA minicircle model.

Sayar M, Avşaroğlu B, Kabakçioğlu A. Sayar M, et al. Phys Rev E Stat Nonlin Soft Matter Phys. 2010 Apr;81(4 Pt 1):041916. doi: 10.1103/PhysRevE.81.041916. Epub 2010 Apr 22. Phys Rev E Stat Nonlin Soft Matter Phys. 2010. PMID: 20481762

8

Adsorption, folding, and packing of an amphiphilic peptide at the air/water interface.

Engin O, Sayar M. Engin O, et al. Among authors: sayar m. J Phys Chem B. 2012 Feb 23;116(7):2198-207. doi: 10.1021/jp206327y. Epub 2012 Feb 9. J Phys Chem B. 2012. PMID: 22268576

9

Role of Hydrophobic/Aromatic Residues on the Stability of Double-Wall β-Sheet Structures Formed by a Triblock Peptide.

Ozgur B, Sayar M. Ozgur B, et al. Among authors: sayar m. J Phys Chem B. 2017 Apr 27;121(16):4115-4128. doi: 10.1021/acs.jpcb.7b00650. Epub 2017 Apr 17. J Phys Chem B. 2017. PMID: 28399374

10

Assembly of Triblock Amphiphilic Peptides into One-Dimensional Aggregates and Network Formation.

Ozgur B, Sayar M. Ozgur B, et al. Among authors: sayar m. J Phys Chem B. 2016 Oct 6;120(39):10243-10257. doi: 10.1021/acs.jpcb.6b07545. Epub 2016 Sep 27. J Phys Chem B. 2016. PMID: 27635660

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