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Critical Assessment of Metagenome Interpretation-a benchmark of metagenomics software.
Sczyrba A, Hofmann P, Belmann P, Koslicki D, Janssen S, Dröge J, Gregor I, Majda S, Fiedler J, Dahms E, Bremges A, Fritz A, Garrido-Oter R, Jørgensen TS, Shapiro N, Blood PD, Gurevich A, Bai Y, Turaev D, DeMaere MZ, Chikhi R, Nagarajan N, Quince C, Meyer F, Balvočiūtė M, Hansen LH, Sørensen SJ, Chia BKH, Denis B, Froula JL, Wang Z, Egan R, Don Kang D, Cook JJ, Deltel C, Beckstette M, Lemaitre C, Peterlongo P, Rizk G, Lavenier D, Wu YW, Singer SW, Jain C, Strous M, Klingenberg H, Meinicke P, Barton MD, Lingner T, Lin HH, Liao YC, Silva GGZ, Cuevas DA, Edwards RA, Saha S, Piro VC, Renard BY, Pop M, Klenk HP, Göker M, Kyrpides NC, Woyke T, Vorholt JA, Schulze-Lefert P, Rubin EM, Darling AE, Rattei T, McHardy AC. Sczyrba A, et al. Among authors: edwards ra. Nat Methods. 2017 Nov;14(11):1063-1071. doi: 10.1038/nmeth.4458. Epub 2017 Oct 2. Nat Methods. 2017. PMID: 28967888 Free PMC article.
Viral metagenomics.
Edwards RA, Rohwer F. Edwards RA, et al. Nat Rev Microbiol. 2005 Jun;3(6):504-10. doi: 10.1038/nrmicro1163. Nat Rev Microbiol. 2005. PMID: 15886693 Review.
Sequencing at sea: challenges and experiences in Ion Torrent PGM sequencing during the 2013 Southern Line Islands Research Expedition.
Lim YW, Cuevas DA, Silva GG, Aguinaldo K, Dinsdale EA, Haas AF, Hatay M, Sanchez SE, Wegley-Kelly L, Dutilh BE, Harkins TT, Lee CC, Tom W, Sandin SA, Smith JE, Zgliczynski B, Vermeij MJ, Rohwer F, Edwards RA. Lim YW, et al. Among authors: edwards ra. PeerJ. 2014 Aug 19;2:e520. doi: 10.7717/peerj.520. eCollection 2014. PeerJ. 2014. PMID: 25177534 Free PMC article.
From DNA to FBA: How to Build Your Own Genome-Scale Metabolic Model.
Cuevas DA, Edirisinghe J, Henry CS, Overbeek R, O'Connell TG, Edwards RA. Cuevas DA, et al. Among authors: edwards ra. Front Microbiol. 2016 Jun 17;7:907. doi: 10.3389/fmicb.2016.00907. eCollection 2016. Front Microbiol. 2016. PMID: 27379044 Free PMC article.
Using viromes to predict novel immune proteins in non-model organisms.
Quistad SD, Lim YW, Silva GG, Nelson CE, Haas AF, Kelly LW, Edwards RA, Rohwer FL. Quistad SD, et al. Among authors: edwards ra. Proc Biol Sci. 2016 Aug 31;283(1837):20161200. doi: 10.1098/rspb.2016.1200. Proc Biol Sci. 2016. PMID: 27581878 Free PMC article.
371 results