Quackenbush J - Search Results

1

Tissue-aware RNA-Seq processing and normalization for heterogeneous and sparse data.

Paulson JN, Chen CY, Lopes-Ramos CM, Kuijjer ML, Platig J, Sonawane AR, Fagny M, Glass K, Quackenbush J. Paulson JN, et al. Among authors: quackenbush j. BMC Bioinformatics. 2017 Oct 3;18(1):437. doi: 10.1186/s12859-017-1847-x. BMC Bioinformatics. 2017. PMID: 28974199 Free PMC article.

2

Data-driven normalization strategies for high-throughput quantitative RT-PCR.

Mar JC, Kimura Y, Schroder K, Irvine KM, Hayashizaki Y, Suzuki H, Hume D, Quackenbush J. Mar JC, et al. Among authors: quackenbush j. BMC Bioinformatics. 2009 Apr 19;10:110. doi: 10.1186/1471-2105-10-110. BMC Bioinformatics. 2009. PMID: 19374774 Free PMC article.

3

An improved empirical bayes approach to estimating differential gene expression in microarray time-course data: BETR (Bayesian Estimation of Temporal Regulation).

Aryee MJ, Gutiérrez-Pabello JA, Kramnik I, Maiti T, Quackenbush J. Aryee MJ, et al. Among authors: quackenbush j. BMC Bioinformatics. 2009 Dec 10;10:409. doi: 10.1186/1471-2105-10-409. BMC Bioinformatics. 2009. PMID: 20003283 Free PMC article.

4

GCOD - GeneChip Oncology Database.

Liu F, White JA, Antonescu C, Gusenleitner D, Quackenbush J. Liu F, et al. Among authors: quackenbush j. BMC Bioinformatics. 2011 Feb 3;12:46. doi: 10.1186/1471-2105-12-46. BMC Bioinformatics. 2011. PMID: 21291543 Free PMC article.

5

Defining an informativeness metric for clustering gene expression data.

Mar JC, Wells CA, Quackenbush J. Mar JC, et al. Among authors: quackenbush j. Bioinformatics. 2011 Apr 15;27(8):1094-100. doi: 10.1093/bioinformatics/btr074. Epub 2011 Feb 16. Bioinformatics. 2011. PMID: 21330289 Free PMC article.

6

RNA-Seq analysis in MeV.

Howe EA, Sinha R, Schlauch D, Quackenbush J. Howe EA, et al. Among authors: quackenbush j. Bioinformatics. 2011 Nov 15;27(22):3209-10. doi: 10.1093/bioinformatics/btr490. Epub 2011 Oct 5. Bioinformatics. 2011. PMID: 21976420 Free PMC article.

7

nEASE: a method for gene ontology subclassification of high-throughput gene expression data.

Chittenden TW, Howe EA, Taylor JM, Mar JC, Aryee MJ, Gómez H, Sultana R, Braisted J, Nair SJ, Quackenbush J, Holmes C. Chittenden TW, et al. Among authors: quackenbush j. Bioinformatics. 2012 Mar 1;28(5):726-8. doi: 10.1093/bioinformatics/bts011. Epub 2012 Jan 13. Bioinformatics. 2012. PMID: 22247278 Free PMC article.

8

iBBiG: iterative binary bi-clustering of gene sets.

Gusenleitner D, Howe EA, Bentink S, Quackenbush J, Culhane AC. Gusenleitner D, et al. Among authors: quackenbush j. Bioinformatics. 2012 Oct 1;28(19):2484-92. doi: 10.1093/bioinformatics/bts438. Epub 2012 Jul 12. Bioinformatics. 2012. PMID: 22789589 Free PMC article.

9

Passing messages between biological networks to refine predicted interactions.

Glass K, Huttenhower C, Quackenbush J, Yuan GC. Glass K, et al. Among authors: quackenbush j. PLoS One. 2013 May 31;8(5):e64832. doi: 10.1371/journal.pone.0064832. Print 2013. PLoS One. 2013. PMID: 23741402 Free PMC article.

10

Sexually-dimorphic targeting of functionally-related genes in COPD.

Glass K, Quackenbush J, Silverman EK, Celli B, Rennard SI, Yuan GC, DeMeo DL. Glass K, et al. Among authors: quackenbush j. BMC Syst Biol. 2014 Nov 28;8:118. doi: 10.1186/s12918-014-0118-y. BMC Syst Biol. 2014. PMID: 25431000 Free PMC article.

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