Xia Y - Search Results

1

SVmine improves structural variation detection by integrative mining of predictions from multiple algorithms.

Xia Y, Liu Y, Deng M, Xi R. Xia Y, et al. Bioinformatics. 2017 Nov 1;33(21):3348-3354. doi: 10.1093/bioinformatics/btx455. Bioinformatics. 2017. PMID: 29036467

2

PDEGEM: Modeling non-uniform read distribution in RNA-Seq data.

Xia Y, Wang F, Qian M, Qin Z, Deng M. Xia Y, et al. BMC Med Genomics. 2015;8 Suppl 2(Suppl 2):S14. doi: 10.1186/1755-8794-8-S2-S14. Epub 2015 May 29. BMC Med Genomics. 2015. PMID: 26044773 Free PMC article.

3

Copy number analysis of whole-genome data using BIC-seq2 and its application to detection of cancer susceptibility variants.

Xi R, Lee S, Xia Y, Kim TM, Park PJ. Xi R, et al. Among authors: xia y. Nucleic Acids Res. 2016 Jul 27;44(13):6274-86. doi: 10.1093/nar/gkw491. Epub 2016 Jun 3. Nucleic Acids Res. 2016. PMID: 27260798 Free PMC article.

4

A microscopic landscape of the invasive breast cancer genome.

Ping Z, Xia Y, Shen T, Parekh V, Siegal GP, Eltoum IE, He J, Chen D, Deng M, Xi R, Shen D. Ping Z, et al. Among authors: xia y. Sci Rep. 2016 Jun 10;6:27545. doi: 10.1038/srep27545. Sci Rep. 2016. PMID: 27283966 Free PMC article.

5

Cell Culture System for Analysis of Genetic Heterogeneity Within Hepatocellular Carcinomas and Response to Pharmacologic Agents.

Gao Q, Wang ZC, Duan M, Lin YH, Zhou XY, Worthley DL, Wang XY, Niu G, Xia Y, Deng M, Liu LZ, Shi JY, Yang LX, Zhang S, Ding ZB, Zhou J, Liang CM, Cao Y, Xiong L, Xi R, Shi YY, Fan J. Gao Q, et al. Among authors: xia y. Gastroenterology. 2017 Jan;152(1):232-242.e4. doi: 10.1053/j.gastro.2016.09.008. Epub 2016 Sep 14. Gastroenterology. 2017. PMID: 27639803

6

Pysim-sv: a package for simulating structural variation data with GC-biases.

Xia Y, Liu Y, Deng M, Xi R. Xia Y, et al. BMC Bioinformatics. 2017 Mar 14;18(Suppl 3):53. doi: 10.1186/s12859-017-1464-8. BMC Bioinformatics. 2017. PMID: 28361688 Free PMC article.

7

Genomic analysis of oesophageal squamous-cell carcinoma identifies alcohol drinking-related mutation signature and genomic alterations.

Chang J, Tan W, Ling Z, Xi R, Shao M, Chen M, Luo Y, Zhao Y, Liu Y, Huang X, Xia Y, Hu J, Parker JS, Marron D, Cui Q, Peng L, Chu J, Li H, Du Z, Han Y, Tan W, Liu Z, Zhan Q, Li Y, Mao W, Wu C, Lin D. Chang J, et al. Among authors: xia y. Nat Commun. 2017 May 26;8:15290. doi: 10.1038/ncomms15290. Nat Commun. 2017. PMID: 28548104 Free PMC article.

8

Detecting virus integration sites based on multiple related sequencing data by VirTect.

Xia Y, Liu Y, Deng M, Xi R. Xia Y, et al. BMC Med Genomics. 2019 Jan 31;12(Suppl 1):19. doi: 10.1186/s12920-018-0461-8. BMC Med Genomics. 2019. PMID: 30704462 Free PMC article.

9

Somatic mutations in renal cell carcinomas from Chinese patients revealed by targeted gene panel sequencing and their associations with prognosis and PD-L1 expression.

Wang J, Xi J, Zhang H, Li J, Xia Y, Xi R, Xi Z. Wang J, et al. Among authors: xia y. Cancer Commun (Lond). 2019 Jun 21;39(1):37. doi: 10.1186/s40880-019-0382-8. Cancer Commun (Lond). 2019. PMID: 31227023 Free PMC article. No abstract available.

10

CNV-BAC: Copy number Variation Detection in Bacterial Circular Genome.

Wu L, Wang H, Xia Y, Xi R. Wu L, et al. Among authors: xia y. Bioinformatics. 2020 Jun 1;36(12):3890-3891. doi: 10.1093/bioinformatics/btaa208. Bioinformatics. 2020. PMID: 32219377

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