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Page 1
UNC-45a promotes myosin folding and stress fiber assembly.
Lehtimäki JI, Fenix AM, Kotila TM, Balistreri G, Paavolainen L, Varjosalo M, Burnette DT, Lappalainen P. Lehtimäki JI, et al. Among authors: paavolainen l. J Cell Biol. 2017 Dec 4;216(12):4053-4072. doi: 10.1083/jcb.201703107. Epub 2017 Oct 20. J Cell Biol. 2017. PMID: 29055011 Free PMC article.
BIAFLOWS: A Collaborative Framework to Reproducibly Deploy and Benchmark Bioimage Analysis Workflows.
Rubens U, Mormont R, Paavolainen L, Bäcker V, Pavie B, Scholz LA, Michiels G, Maška M, Ünay D, Ball G, Hoyoux R, Vandaele R, Golani O, Stanciu SG, Sladoje N, Paul-Gilloteaux P, Marée R, Tosi S. Rubens U, et al. Among authors: paavolainen l. Patterns (N Y). 2020 Jun 3;1(3):100040. doi: 10.1016/j.patter.2020.100040. eCollection 2020 Jun 12. Patterns (N Y). 2020. PMID: 33205108 Free PMC article.
Piximi - An Images to Discovery web tool for bioimages and beyond.
Moser LM, Gogoberidze N, Papaleo A, Lucas A, Dao D, Friedrich CA, Paavolainen L, Molnar C, Stirling DR, Hung J, Wang R, Tromans-Coia C, Li B, Evans EL 3rd, Eliceiri KW, Horvath P, Carpenter AE, Cimini BA. Moser LM, et al. Among authors: paavolainen l. bioRxiv [Preprint]. 2024 Oct 10:2024.06.03.597232. doi: 10.1101/2024.06.03.597232. bioRxiv. 2024. PMID: 38895349 Free PMC article. Preprint.
Calpains promote α2β1 integrin turnover in nonrecycling integrin pathway.
Rintanen N, Karjalainen M, Alanko J, Paavolainen L, Mäki A, Nissinen L, Lehkonen M, Kallio K, Cheng RH, Upla P, Ivaska J, Marjomäki V. Rintanen N, et al. Among authors: paavolainen l. Mol Biol Cell. 2012 Feb;23(3):448-63. doi: 10.1091/mbc.E11-06-0548. Epub 2011 Dec 7. Mol Biol Cell. 2012. PMID: 22160595 Free PMC article.
Drug repurposing platform for deciphering the druggable SARS-CoV-2 interactome.
Bogacheva MS, Kuivanen S, Potdar S, Hassinen A, Huuskonen S, Pöhner I, Luck TJ, Turunen L, Feodoroff M, Szirovicza L, Savijoki K, Saarela J, Tammela P, Paavolainen L, Poso A, Varjosalo M, Kallioniemi O, Pietiäinen V, Vapalahti O. Bogacheva MS, et al. Among authors: paavolainen l. Antiviral Res. 2024 Mar;223:105813. doi: 10.1016/j.antiviral.2024.105813. Epub 2024 Jan 24. Antiviral Res. 2024. PMID: 38272320 Free article.
Nucleus segmentation: towards automated solutions.
Hollandi R, Moshkov N, Paavolainen L, Tasnadi E, Piccinini F, Horvath P. Hollandi R, et al. Among authors: paavolainen l. Trends Cell Biol. 2022 Apr;32(4):295-310. doi: 10.1016/j.tcb.2021.12.004. Epub 2022 Jan 21. Trends Cell Biol. 2022. PMID: 35067424 Review.
Image-based and machine learning-guided multiplexed serology test for SARS-CoV-2.
Pietiäinen V, Polso M, Migh E, Guckelsberger C, Harmati M, Diosdi A, Turunen L, Hassinen A, Potdar S, Koponen A, Sebestyen EG, Kovacs F, Kriston A, Hollandi R, Burian K, Terhes G, Visnyovszki A, Fodor E, Lacza Z, Kantele A, Kolehmainen P, Kakkola L, Strandin T, Levanov L, Kallioniemi O, Kemeny L, Julkunen I, Vapalahti O, Buzas K, Paavolainen L, Horvath P, Hepojoki J. Pietiäinen V, et al. Among authors: paavolainen l. Cell Rep Methods. 2023 Aug 22;3(8):100565. doi: 10.1016/j.crmeth.2023.100565. eCollection 2023 Aug 28. Cell Rep Methods. 2023. PMID: 37671026 Free PMC article.
A functional genetic screen defines the AKT-induced senescence signaling network.
Chan KT, Blake S, Zhu H, Kang J, Trigos AS, Madhamshettiwar PB, Diesch J, Paavolainen L, Horvath P, Hannan RD, George AJ, Sanij E, Hannan KM, Simpson KJ, Pearson RB. Chan KT, et al. Among authors: paavolainen l. Cell Death Differ. 2020 Feb;27(2):725-741. doi: 10.1038/s41418-019-0384-8. Epub 2019 Jul 8. Cell Death Differ. 2020. PMID: 31285545 Free PMC article.
nucleAIzer: A Parameter-free Deep Learning Framework for Nucleus Segmentation Using Image Style Transfer.
Hollandi R, Szkalisity A, Toth T, Tasnadi E, Molnar C, Mathe B, Grexa I, Molnar J, Balind A, Gorbe M, Kovacs M, Migh E, Goodman A, Balassa T, Koos K, Wang W, Caicedo JC, Bara N, Kovacs F, Paavolainen L, Danka T, Kriston A, Carpenter AE, Smith K, Horvath P. Hollandi R, et al. Among authors: paavolainen l. Cell Syst. 2020 May 20;10(5):453-458.e6. doi: 10.1016/j.cels.2020.04.003. Epub 2020 May 7. Cell Syst. 2020. PMID: 34222682 Free PMC article.
47 results