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Page 1
The Sphagnome Project: enabling ecological and evolutionary insights through a genus-level sequencing project.
Weston DJ, Turetsky MR, Johnson MG, Granath G, Lindo Z, Belyea LR, Rice SK, Hanson DT, Engelhardt KAM, Schmutz J, Dorrepaal E, Euskirchen ES, Stenøien HK, Szövényi P, Jackson M, Piatkowski BT, Muchero W, Norby RJ, Kostka JE, Glass JB, Rydin H, Limpens J, Tuittila ES, Ullrich KK, Carrell A, Benscoter BW, Chen JG, Oke TA, Nilsson MB, Ranjan P, Jacobson D, Lilleskov EA, Clymo RS, Shaw AJ. Weston DJ, et al. Among authors: schmutz j. New Phytol. 2018 Jan;217(1):16-25. doi: 10.1111/nph.14860. Epub 2017 Oct 27. New Phytol. 2018. PMID: 29076547 Free article.
Genomics. Genome project standards in a new era of sequencing.
Chain PS, Grafham DV, Fulton RS, Fitzgerald MG, Hostetler J, Muzny D, Ali J, Birren B, Bruce DC, Buhay C, Cole JR, Ding Y, Dugan S, Field D, Garrity GM, Gibbs R, Graves T, Han CS, Harrison SH, Highlander S, Hugenholtz P, Khouri HM, Kodira CD, Kolker E, Kyrpides NC, Lang D, Lapidus A, Malfatti SA, Markowitz V, Metha T, Nelson KE, Parkhill J, Pitluck S, Qin X, Read TD, Schmutz J, Sozhamannan S, Sterk P, Strausberg RL, Sutton G, Thomson NR, Tiedje JM, Weinstock G, Wollam A; Genomic Standards Consortium Human Microbiome Project Jumpstart Consortium; Detter JC. Chain PS, et al. Among authors: schmutz j. Science. 2009 Oct 9;326(5950):236-7. doi: 10.1126/science.1180614. Science. 2009. PMID: 19815760 Free PMC article.
Sequencing crop genomes: approaches and applications.
Jackson SA, Iwata A, Lee SH, Schmutz J, Shoemaker R. Jackson SA, et al. Among authors: schmutz j. New Phytol. 2011 Sep;191(4):915-925. doi: 10.1111/j.1469-8137.2011.03804.x. Epub 2011 Jun 27. New Phytol. 2011. PMID: 21707621 Free article. Review.
Sphagnum physiology in the context of changing climate: emergent influences of genomics, modelling and host-microbiome interactions on understanding ecosystem function.
Weston DJ, Timm CM, Walker AP, Gu L, Muchero W, Schmutz J, Shaw AJ, Tuskan GA, Warren JM, Wullschleger SD. Weston DJ, et al. Among authors: schmutz j. Plant Cell Environ. 2015 Sep;38(9):1737-51. doi: 10.1111/pce.12458. Epub 2014 Dec 7. Plant Cell Environ. 2015. PMID: 25266403 Free article. Review.
A roadmap for research on crassulacean acid metabolism (CAM) to enhance sustainable food and bioenergy production in a hotter, drier world.
Yang X, Cushman JC, Borland AM, Edwards EJ, Wullschleger SD, Tuskan GA, Owen NA, Griffiths H, Smith JA, De Paoli HC, Weston DJ, Cottingham R, Hartwell J, Davis SC, Silvera K, Ming R, Schlauch K, Abraham P, Stewart JR, Guo HB, Albion R, Ha J, Lim SD, Wone BW, Yim WC, Garcia T, Mayer JA, Petereit J, Nair SS, Casey E, Hettich RL, Ceusters J, Ranjan P, Palla KJ, Yin H, Reyes-García C, Andrade JL, Freschi L, Beltrán JD, Dever LV, Boxall SF, Waller J, Davies J, Bupphada P, Kadu N, Winter K, Sage RF, Aguilar CN, Schmutz J, Jenkins J, Holtum JA. Yang X, et al. Among authors: schmutz j. New Phytol. 2015 Aug;207(3):491-504. doi: 10.1111/nph.13393. New Phytol. 2015. PMID: 26153373 Free article. Review.
Genome-wide analysis of lectin receptor-like kinases in Populus.
Yang Y, Labbé J, Muchero W, Yang X, Jawdy SS, Kennedy M, Johnson J, Sreedasyam A, Schmutz J, Tuskan GA, Chen JG. Yang Y, et al. Among authors: schmutz j. BMC Genomics. 2016 Sep 1;17(1):699. doi: 10.1186/s12864-016-3026-2. BMC Genomics. 2016. PMID: 27580945 Free PMC article.
The Kalanchoë genome provides insights into convergent evolution and building blocks of crassulacean acid metabolism.
Yang X, Hu R, Yin H, Jenkins J, Shu S, Tang H, Liu D, Weighill DA, Cheol Yim W, Ha J, Heyduk K, Goodstein DM, Guo HB, Moseley RC, Fitzek E, Jawdy S, Zhang Z, Xie M, Hartwell J, Grimwood J, Abraham PE, Mewalal R, Beltrán JD, Boxall SF, Dever LV, Palla KJ, Albion R, Garcia T, Mayer JA, Don Lim S, Man Wai C, Peluso P, Van Buren R, De Paoli HC, Borland AM, Guo H, Chen JG, Muchero W, Yin Y, Jacobson DA, Tschaplinski TJ, Hettich RL, Ming R, Winter K, Leebens-Mack JH, Smith JAC, Cushman JC, Schmutz J, Tuskan GA. Yang X, et al. Among authors: schmutz j. Nat Commun. 2017 Dec 1;8(1):1899. doi: 10.1038/s41467-017-01491-7. Nat Commun. 2017. PMID: 29196618 Free PMC article.
The Physcomitrella patens chromosome-scale assembly reveals moss genome structure and evolution.
Lang D, Ullrich KK, Murat F, Fuchs J, Jenkins J, Haas FB, Piednoel M, Gundlach H, Van Bel M, Meyberg R, Vives C, Morata J, Symeonidi A, Hiss M, Muchero W, Kamisugi Y, Saleh O, Blanc G, Decker EL, van Gessel N, Grimwood J, Hayes RD, Graham SW, Gunter LE, McDaniel SF, Hoernstein SNW, Larsson A, Li FW, Perroud PF, Phillips J, Ranjan P, Rokshar DS, Rothfels CJ, Schneider L, Shu S, Stevenson DW, Thümmler F, Tillich M, Villarreal Aguilar JC, Widiez T, Wong GK, Wymore A, Zhang Y, Zimmer AD, Quatrano RS, Mayer KFX, Goodstein D, Casacuberta JM, Vandepoele K, Reski R, Cuming AC, Tuskan GA, Maumus F, Salse J, Schmutz J, Rensing SA. Lang D, et al. Among authors: schmutz j. Plant J. 2018 Feb;93(3):515-533. doi: 10.1111/tpj.13801. Plant J. 2018. PMID: 29237241 Free article.
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