Haapa-Paananen S - Search Results

1

Applications of the Bacteriophage Mu In Vitro Transposition Reaction and Genome Manipulation via Electroporation of DNA Transposition Complexes.

Haapa-Paananen S, Savilahti H. Haapa-Paananen S, et al. Methods Mol Biol. 2018;1681:279-286. doi: 10.1007/978-1-4939-7343-9_20. Methods Mol Biol. 2018. PMID: 29134602

2

MuA-mediated in vitro cloning of circular DNA: transpositional autointegration and the effect of MuB.

Pulkkinen E, Haapa-Paananen S, Savilahti H. Pulkkinen E, et al. Among authors: haapa paananen s. Mol Genet Genomics. 2016 Jun;291(3):1181-91. doi: 10.1007/s00438-016-1175-2. Epub 2016 Feb 4. Mol Genet Genomics. 2016. PMID: 26847688

3

A set of mini-Mu transposons for versatile cloning of circular DNA and novel dual-transposon strategy for increased efficiency.

Pulkkinen E, Haapa-Paananen S, Turakainen H, Savilahti H. Pulkkinen E, et al. Among authors: haapa paananen s. Plasmid. 2016 Jul;86:46-53. doi: 10.1016/j.plasmid.2016.07.002. Epub 2016 Jul 4. Plasmid. 2016. PMID: 27387339

4

Mu transpososome activity-profiling yields hyperactive MuA variants for highly efficient genetic and genome engineering.

Rasila TS, Pulkkinen E, Kiljunen S, Haapa-Paananen S, Pajunen MI, Salminen A, Paulin L, Vihinen M, Rice PA, Savilahti H. Rasila TS, et al. Among authors: haapa paananen s. Nucleic Acids Res. 2018 May 18;46(9):4649-4661. doi: 10.1093/nar/gkx1281. Nucleic Acids Res. 2018. PMID: 29294068 Free PMC article.

5

DNA transposition of bacteriophage Mu. A quantitative analysis of target site selection in vitro.

Haapa-Paananen S, Rita H, Savilahti H. Haapa-Paananen S, et al. J Biol Chem. 2002 Jan 25;277(4):2843-51. doi: 10.1074/jbc.M108044200. Epub 2001 Nov 7. J Biol Chem. 2002. PMID: 11700310 Free article.

6

Universal platform for quantitative analysis of DNA transposition.

Pajunen MI, Rasila TS, Happonen LJ, Lamberg A, Haapa-Paananen S, Kiljunen S, Savilahti H. Pajunen MI, et al. Mob DNA. 2010 Nov 26;1(1):24. doi: 10.1186/1759-8753-1-24. Mob DNA. 2010. PMID: 21110848 Free PMC article.

7

Phylogenetic analysis of Maverick/Polinton giant transposons across organisms.

Haapa-Paananen S, Wahlberg N, Savilahti H. Haapa-Paananen S, et al. Mol Phylogenet Evol. 2014 Sep;78:271-4. doi: 10.1016/j.ympev.2014.05.024. Epub 2014 Jun 2. Mol Phylogenet Evol. 2014. PMID: 24882428

8

An assay to monitor the activity of DNA transposition complexes yields a general quality control measure for transpositional recombination reactions.

Pulkkinen E, Haapa-Paananen S, Savilahti H. Pulkkinen E, et al. Among authors: haapa paananen s. Mob Genet Elements. 2014 Oct 30;4(5):1-8. doi: 10.4161/21592543.2014.969576. eCollection 2014 Oct. Mob Genet Elements. 2014. PMID: 26442171 Free PMC article.

9

Flexibility in MuA transposase family protein structures: functional mapping with scanning mutagenesis and sequence alignment of protein homologues.

Rasila TS, Vihinen M, Paulin L, Haapa-Paananen S, Savilahti H. Rasila TS, et al. PLoS One. 2012;7(5):e37922. doi: 10.1371/journal.pone.0037922. Epub 2012 May 29. PLoS One. 2012. PMID: 22666413 Free PMC article.

10

GTI: a novel algorithm for identifying outlier gene expression profiles from integrated microarray datasets.

Mpindi JP, Sara H, Haapa-Paananen S, Kilpinen S, Pisto T, Bucher E, Ojala K, Iljin K, Vainio P, Björkman M, Gupta S, Kohonen P, Nees M, Kallioniemi O. Mpindi JP, et al. PLoS One. 2011 Feb 18;6(2):e17259. doi: 10.1371/journal.pone.0017259. PLoS One. 2011. PMID: 21365010 Free PMC article.

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