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Page 1
Natural selection shaped the rise and fall of passenger pigeon genomic diversity.
Murray GGR, Soares AER, Novak BJ, Schaefer NK, Cahill JA, Baker AJ, Demboski JR, Doll A, Da Fonseca RR, Fulton TL, Gilbert MTP, Heintzman PD, Letts B, McIntosh G, O'Connell BL, Peck M, Pipes ML, Rice ES, Santos KM, Sohrweide AG, Vohr SH, Corbett-Detig RB, Green RE, Shapiro B. Murray GGR, et al. Among authors: soares aer. Science. 2017 Nov 17;358(6365):951-954. doi: 10.1126/science.aao0960. Science. 2017. PMID: 29146814
Fossil and genomic evidence constrains the timing of bison arrival in North America.
Froese D, Stiller M, Heintzman PD, Reyes AV, Zazula GD, Soares AE, Meyer M, Hall E, Jensen BJ, Arnold LJ, MacPhee RD, Shapiro B. Froese D, et al. Proc Natl Acad Sci U S A. 2017 Mar 28;114(13):3457-3462. doi: 10.1073/pnas.1620754114. Epub 2017 Mar 13. Proc Natl Acad Sci U S A. 2017. PMID: 28289222 Free PMC article.
Dense sampling of bird diversity increases power of comparative genomics.
Feng S, Stiller J, Deng Y, Armstrong J, Fang Q, Reeve AH, Xie D, Chen G, Guo C, Faircloth BC, Petersen B, Wang Z, Zhou Q, Diekhans M, Chen W, Andreu-Sánchez S, Margaryan A, Howard JT, Parent C, Pacheco G, Sinding MS, Puetz L, Cavill E, Ribeiro ÂM, Eckhart L, Fjeldså J, Hosner PA, Brumfield RT, Christidis L, Bertelsen MF, Sicheritz-Ponten T, Tietze DT, Robertson BC, Song G, Borgia G, Claramunt S, Lovette IJ, Cowen SJ, Njoroge P, Dumbacher JP, Ryder OA, Fuchs J, Bunce M, Burt DW, Cracraft J, Meng G, Hackett SJ, Ryan PG, Jønsson KA, Jamieson IG, da Fonseca RR, Braun EL, Houde P, Mirarab S, Suh A, Hansson B, Ponnikas S, Sigeman H, Stervander M, Frandsen PB, van der Zwan H, van der Sluis R, Visser C, Balakrishnan CN, Clark AG, Fitzpatrick JW, Bowman R, Chen N, Cloutier A, Sackton TB, Edwards SV, Foote DJ, Shakya SB, Sheldon FH, Vignal A, Soares AER, Shapiro B, González-Solís J, Ferrer-Obiol J, Rozas J, Riutort M, Tigano A, Friesen V, Dalén L, Urrutia AO, Székely T, Liu Y, Campana MG, Corvelo A, Fleischer RC, Rutherford KM, Gemmell NJ, Dussex N, Mouritsen H, Thiele N, Delmore K, Liedvogel M, Franke A, Hoeppner MP, Krone O, Fudickar AM, Milá B, Ketterson ED, Fidler AE, Friis G, Pa… See abstract for full author list ➔ Feng S, et al. Among authors: soares aer. Nature. 2020 Nov;587(7833):252-257. doi: 10.1038/s41586-020-2873-9. Epub 2020 Nov 11. Nature. 2020. PMID: 33177665 Free PMC article.
Demographic reconstruction from ancient DNA supports rapid extinction of the great auk.
Thomas JE, Carvalho GR, Haile J, Rawlence NJ, Martin MD, Ho SY, Sigfússon AÞ, Jósefsson VA, Frederiksen M, Linnebjerg JF, Samaniego Castruita JA, Niemann J, Sinding MS, Sandoval-Velasco M, Soares AE, Lacy R, Barilaro C, Best J, Brandis D, Cavallo C, Elorza M, Garrett KL, Groot M, Johansson F, Lifjeld JT, Nilson G, Serjeanston D, Sweet P, Fuller E, Hufthammer AK, Meldgaard M, Fjeldså J, Shapiro B, Hofreiter M, Stewart JR, Gilbert MTP, Knapp M. Thomas JE, et al. Elife. 2019 Nov 26;8:e47509. doi: 10.7554/eLife.47509. Elife. 2019. PMID: 31767056 Free PMC article.
Bison phylogeography constrains dispersal and viability of the Ice Free Corridor in western Canada.
Heintzman PD, Froese D, Ives JW, Soares AE, Zazula GD, Letts B, Andrews TD, Driver JC, Hall E, Hare PG, Jass CN, MacKay G, Southon JR, Stiller M, Woywitka R, Suchard MA, Shapiro B. Heintzman PD, et al. Proc Natl Acad Sci U S A. 2016 Jul 19;113(29):8057-63. doi: 10.1073/pnas.1601077113. Epub 2016 Jun 6. Proc Natl Acad Sci U S A. 2016. PMID: 27274051 Free PMC article.
Author Correction: Dense sampling of bird diversity increases power of comparative genomics.
Feng S, Stiller J, Deng Y, Armstrong J, Fang Q, Reeve AH, Xie D, Chen G, Guo C, Faircloth BC, Petersen B, Wang Z, Zhou Q, Diekhans M, Chen W, Andreu-Sánchez S, Margaryan A, Howard JT, Parent C, Pacheco G, Sinding MS, Puetz L, Cavill E, Ribeiro ÂM, Eckhart L, Fjeldså J, Hosner PA, Brumfield RT, Christidis L, Bertelsen MF, Sicheritz-Ponten T, Tietze DT, Robertson BC, Song G, Borgia G, Claramunt S, Lovette IJ, Cowen SJ, Njoroge P, Dumbacher JP, Ryder OA, Fuchs J, Bunce M, Burt DW, Cracraft J, Meng G, Hackett SJ, Ryan PG, Jønsson KA, Jamieson IG, da Fonseca RR, Braun EL, Houde P, Mirarab S, Suh A, Hansson B, Ponnikas S, Sigeman H, Stervander M, Frandsen PB, van der Zwan H, van der Sluis R, Visser C, Balakrishnan CN, Clark AG, Fitzpatrick JW, Bowman R, Chen N, Cloutier A, Sackton TB, Edwards SV, Foote DJ, Shakya SB, Sheldon FH, Vignal A, Soares AER, Shapiro B, González-Solís J, Ferrer-Obiol J, Rozas J, Riutort M, Tigano A, Friesen V, Dalén L, Urrutia AO, Székely T, Liu Y, Campana MG, Corvelo A, Fleischer RC, Rutherford KM, Gemmell NJ, Dussex N, Mouritsen H, Thiele N, Delmore K, Liedvogel M, Franke A, Hoeppner MP, Krone O, Fudickar AM, Milá B, Ketterson ED, Fidler AE, Friis G, Pa… See abstract for full author list ➔ Feng S, et al. Among authors: soares aer. Nature. 2021 Apr;592(7856):E24. doi: 10.1038/s41586-021-03473-8. Nature. 2021. PMID: 33833441 Free PMC article. No abstract available.
Ancient genomes from North Africa evidence prehistoric migrations to the Maghreb from both the Levant and Europe.
Fregel R, Méndez FL, Bokbot Y, Martín-Socas D, Camalich-Massieu MD, Santana J, Morales J, Ávila-Arcos MC, Underhill PA, Shapiro B, Wojcik G, Rasmussen M, Soares AER, Kapp J, Sockell A, Rodríguez-Santos FJ, Mikdad A, Trujillo-Mederos A, Bustamante CD. Fregel R, et al. Among authors: soares aer. Proc Natl Acad Sci U S A. 2018 Jun 26;115(26):6774-6779. doi: 10.1073/pnas.1800851115. Epub 2018 Jun 12. Proc Natl Acad Sci U S A. 2018. PMID: 29895688 Free PMC article.
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