Lahens NF - Search Results

1

Outlier detection for improved differential splicing quantification from RNA-Seq experiments with replicates.

Norton SS, Vaquero-Garcia J, Lahens NF, Grant GR, Barash Y. Norton SS, et al. Among authors: lahens nf. Bioinformatics. 2018 May 1;34(9):1488-1497. doi: 10.1093/bioinformatics/btx790. Bioinformatics. 2018. PMID: 29236961 Free PMC article.

2

Comparative analysis of RNA-Seq alignment algorithms and the RNA-Seq unified mapper (RUM).

Grant GR, Farkas MH, Pizarro AD, Lahens NF, Schug J, Brunk BP, Stoeckert CJ, Hogenesch JB, Pierce EA. Grant GR, et al. Among authors: lahens nf. Bioinformatics. 2011 Sep 15;27(18):2518-28. doi: 10.1093/bioinformatics/btr427. Epub 2011 Jul 19. Bioinformatics. 2011. PMID: 21775302 Free PMC article.

3

IVT-seq reveals extreme bias in RNA sequencing.

Lahens NF, Kavakli IH, Zhang R, Hayer K, Black MB, Dueck H, Pizarro A, Kim J, Irizarry R, Thomas RS, Grant GR, Hogenesch JB. Lahens NF, et al. Genome Biol. 2014 Jun 30;15(6):R86. doi: 10.1186/gb-2014-15-6-r86. Genome Biol. 2014. PMID: 24981968 Free PMC article.

4

Detection theory in identification of RNA-DNA sequence differences using RNA-sequencing.

Toung JM, Lahens N, Hogenesch JB, Grant G. Toung JM, et al. PLoS One. 2014 Nov 14;9(11):e112040. doi: 10.1371/journal.pone.0112040. eCollection 2014. PLoS One. 2014. PMID: 25396741 Free PMC article.

5

Benchmark analysis of algorithms for determining and quantifying full-length mRNA splice forms from RNA-seq data.

Hayer KE, Pizarro A, Lahens NF, Hogenesch JB, Grant GR. Hayer KE, et al. Among authors: lahens nf. Bioinformatics. 2015 Dec 15;31(24):3938-45. doi: 10.1093/bioinformatics/btv488. Epub 2015 Sep 3. Bioinformatics. 2015. PMID: 26338770 Free PMC article.

6

A new view of transcriptome complexity and regulation through the lens of local splicing variations.

Vaquero-Garcia J, Barrera A, Gazzara MR, González-Vallinas J, Lahens NF, Hogenesch JB, Lynch KW, Barash Y. Vaquero-Garcia J, et al. Among authors: lahens nf. Elife. 2016 Feb 1;5:e11752. doi: 10.7554/eLife.11752. Elife. 2016. PMID: 26829591 Free PMC article.

7

A comparison of Illumina and Ion Torrent sequencing platforms in the context of differential gene expression.

Lahens NF, Ricciotti E, Smirnova O, Toorens E, Kim EJ, Baruzzo G, Hayer KE, Ganguly T, Schug J, Grant GR. Lahens NF, et al. BMC Genomics. 2017 Aug 10;18(1):602. doi: 10.1186/s12864-017-4011-0. BMC Genomics. 2017. PMID: 28797240 Free PMC article.

8

A Pilot Characterization of the Human Chronobiome.

Skarke C, Lahens NF, Rhoades SD, Campbell A, Bittinger K, Bailey A, Hoffmann C, Olson RS, Chen L, Yang G, Price TS, Moore JH, Bushman FD, Greene CS, Grant GR, Weljie AM, FitzGerald GA. Skarke C, et al. Among authors: lahens nf. Sci Rep. 2017 Dec 7;7(1):17141. doi: 10.1038/s41598-017-17362-6. Sci Rep. 2017. PMID: 29215023 Free PMC article.

9

Transgenerational inheritance of chronic adolescent stress: Effects of stress response and the amygdala transcriptome.

Manners MT, Yohn NL, Lahens NF, Grant GR, Bartolomei MS, Blendy JA. Manners MT, et al. Among authors: lahens nf. Genes Brain Behav. 2019 Sep;18(7):e12493. doi: 10.1111/gbb.12493. Epub 2018 Jul 4. Genes Brain Behav. 2019. PMID: 29896789 Free PMC article.

10

Variability in the Analgesic Response to Ibuprofen Is Associated With Cyclooxygenase Activation in Inflammatory Pain.

Theken KN, Hersh EV, Lahens NF, Lee HM, Li X, Granquist EJ, Giannakopoulos HE, Levin LM, Secreto SA, Grant GR, Detre JA, FitzGerald GA, Grosser T, Farrar JT. Theken KN, et al. Among authors: lahens nf. Clin Pharmacol Ther. 2019 Sep;106(3):632-641. doi: 10.1002/cpt.1446. Epub 2019 Apr 29. Clin Pharmacol Ther. 2019. PMID: 30929268 Free PMC article. Clinical Trial.

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