Darling AE - Search Results

1

Online Bayesian Phylogenetic Inference: Theoretical Foundations via Sequential Monte Carlo.

Dinh V, Darling AE, Matsen Iv FA. Dinh V, et al. Among authors: darling ae. Syst Biol. 2018 May 1;67(3):503-517. doi: 10.1093/sysbio/syx087. Syst Biol. 2018. PMID: 29244177 Free PMC article.

2

BEAGLE: an application programming interface and high-performance computing library for statistical phylogenetics.

Ayres DL, Darling A, Zwickl DJ, Beerli P, Holder MT, Lewis PO, Huelsenbeck JP, Ronquist F, Swofford DL, Cummings MP, Rambaut A, Suchard MA. Ayres DL, et al. Syst Biol. 2012 Jan;61(1):170-3. doi: 10.1093/sysbio/syr100. Epub 2011 Oct 1. Syst Biol. 2012. PMID: 21963610 Free PMC article.

3

MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space.

Ronquist F, Teslenko M, van der Mark P, Ayres DL, Darling A, Höhna S, Larget B, Liu L, Suchard MA, Huelsenbeck JP. Ronquist F, et al. Syst Biol. 2012 May;61(3):539-42. doi: 10.1093/sysbio/sys029. Epub 2012 Feb 22. Syst Biol. 2012. PMID: 22357727 Free PMC article.

4

Effective Online Bayesian Phylogenetics via Sequential Monte Carlo with Guided Proposals.

Fourment M, Claywell BC, Dinh V, McCoy C, Matsen Iv FA, Darling AE. Fourment M, et al. Among authors: darling ae. Syst Biol. 2018 May 1;67(3):490-502. doi: 10.1093/sysbio/syx090. Syst Biol. 2018. PMID: 29186587 Free PMC article.

5

BEAGLE 3: Improved Performance, Scaling, and Usability for a High-Performance Computing Library for Statistical Phylogenetics.

Ayres DL, Cummings MP, Baele G, Darling AE, Lewis PO, Swofford DL, Huelsenbeck JP, Lemey P, Rambaut A, Suchard MA. Ayres DL, et al. Among authors: darling ae. Syst Biol. 2019 Nov 1;68(6):1052-1061. doi: 10.1093/sysbio/syz020. Syst Biol. 2019. PMID: 31034053 Free PMC article.

6

Fidelity of hyperbolic space for Bayesian phylogenetic inference.

Macaulay M, Darling A, Fourment M. Macaulay M, et al. PLoS Comput Biol. 2023 Apr 26;19(4):e1011084. doi: 10.1371/journal.pcbi.1011084. eCollection 2023 Apr. PLoS Comput Biol. 2023. PMID: 37099595 Free PMC article.

7

PhyloSift: phylogenetic analysis of genomes and metagenomes.

Darling AE, Jospin G, Lowe E, Matsen FA 4th, Bik HM, Eisen JA. Darling AE, et al. PeerJ. 2014 Jan 9;2:e243. doi: 10.7717/peerj.243. eCollection 2014. PeerJ. 2014. PMID: 24482762 Free PMC article.

8

Evaluating probabilistic programming and fast variational Bayesian inference in phylogenetics.

Fourment M, Darling AE. Fourment M, et al. Among authors: darling ae. PeerJ. 2019 Dec 18;7:e8272. doi: 10.7717/peerj.8272. eCollection 2019. PeerJ. 2019. PMID: 31976168 Free PMC article.

9

STRONG: metagenomics strain resolution on assembly graphs.

Quince C, Nurk S, Raguideau S, James R, Soyer OS, Summers JK, Limasset A, Eren AM, Chikhi R, Darling AE. Quince C, et al. Among authors: darling ae. Genome Biol. 2021 Jul 26;22(1):214. doi: 10.1186/s13059-021-02419-7. Genome Biol. 2021. PMID: 34311761 Free PMC article.

10

Indigenous Vibrio cholerae strains from a non-endemic region are pathogenic.

Islam A, Labbate M, Djordjevic SP, Alam M, Darling A, Melvold J, Holmes AJ, Johura FT, Cravioto A, Charles IG, Stokes HW. Islam A, et al. Open Biol. 2013 Feb 13;3(2):120181. doi: 10.1098/rsob.120181. Open Biol. 2013. PMID: 23407641 Free PMC article.

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