Xia B - Search Results

1

High-resolution global peptide-protein docking using fragments-based PIPER-FlexPepDock.

Alam N, Goldstein O, Xia B, Porter KA, Kozakov D, Schueler-Furman O. Alam N, et al. Among authors: xia b. PLoS Comput Biol. 2017 Dec 27;13(12):e1005905. doi: 10.1371/journal.pcbi.1005905. eCollection 2017 Dec. PLoS Comput Biol. 2017. PMID: 29281622 Free PMC article.

2

Accounting for pairwise distance restraints in FFT-based protein-protein docking.

Xia B, Vajda S, Kozakov D. Xia B, et al. Bioinformatics. 2016 Nov 1;32(21):3342-3344. doi: 10.1093/bioinformatics/btw306. Epub 2016 Jun 29. Bioinformatics. 2016. PMID: 27357172 Free PMC article.

3

The ClusPro web server for protein-protein docking.

Kozakov D, Hall DR, Xia B, Porter KA, Padhorny D, Yueh C, Beglov D, Vajda S. Kozakov D, et al. Among authors: xia b. Nat Protoc. 2017 Feb;12(2):255-278. doi: 10.1038/nprot.2016.169. Epub 2017 Jan 12. Nat Protoc. 2017. PMID: 28079879 Free PMC article.

4

ClusPro PeptiDock: efficient global docking of peptide recognition motifs using FFT.

Porter KA, Xia B, Beglov D, Bohnuud T, Alam N, Schueler-Furman O, Kozakov D. Porter KA, et al. Among authors: xia b. Bioinformatics. 2017 Oct 15;33(20):3299-3301. doi: 10.1093/bioinformatics/btx216. Bioinformatics. 2017. PMID: 28430871 Free PMC article.

5

Performance and Its Limits in Rigid Body Protein-Protein Docking.

Desta IT, Porter KA, Xia B, Kozakov D, Vajda S. Desta IT, et al. Among authors: xia b. Structure. 2020 Sep 1;28(9):1071-1081.e3. doi: 10.1016/j.str.2020.06.006. Epub 2020 Jul 9. Structure. 2020. PMID: 32649857 Free PMC article.

6

How good is automated protein docking?

Kozakov D, Beglov D, Bohnuud T, Mottarella SE, Xia B, Hall DR, Vajda S. Kozakov D, et al. Among authors: xia b. Proteins. 2013 Dec;81(12):2159-66. doi: 10.1002/prot.24403. Epub 2013 Oct 17. Proteins. 2013. PMID: 23996272 Free PMC article.

7

Accounting for observed small angle X-ray scattering profile in the protein-protein docking server ClusPro.

Xia B, Mamonov A, Leysen S, Allen KN, Strelkov SV, Paschalidis ICh, Vajda S, Kozakov D. Xia B, et al. J Comput Chem. 2015 Jul 30;36(20):1568-72. doi: 10.1002/jcc.23952. Epub 2015 Jun 10. J Comput Chem. 2015. PMID: 26095982 Free PMC article.

8

Protein-protein docking by fast generalized Fourier transforms on 5D rotational manifolds.

Padhorny D, Kazennov A, Zerbe BS, Porter KA, Xia B, Mottarella SE, Kholodov Y, Ritchie DW, Vajda S, Kozakov D. Padhorny D, et al. Among authors: xia b. Proc Natl Acad Sci U S A. 2016 Jul 26;113(30):E4286-93. doi: 10.1073/pnas.1603929113. Epub 2016 Jul 13. Proc Natl Acad Sci U S A. 2016. PMID: 27412858 Free PMC article.

9

ClusPro-DC: Dimer Classification by the Cluspro Server for Protein-Protein Docking.

Yueh C, Hall DR, Xia B, Padhorny D, Kozakov D, Vajda S. Yueh C, et al. Among authors: xia b. J Mol Biol. 2017 Feb 3;429(3):372-381. doi: 10.1016/j.jmb.2016.10.019. Epub 2016 Oct 19. J Mol Biol. 2017. PMID: 27771482 Free PMC article.

10

New additions to the ClusPro server motivated by CAPRI.

Vajda S, Yueh C, Beglov D, Bohnuud T, Mottarella SE, Xia B, Hall DR, Kozakov D. Vajda S, et al. Among authors: xia b. Proteins. 2017 Mar;85(3):435-444. doi: 10.1002/prot.25219. Epub 2017 Jan 5. Proteins. 2017. PMID: 27936493 Free PMC article.

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