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Developing data interoperability using standards: A wheat community use case.
Dzale Yeumo E, Alaux M, Arnaud E, Aubin S, Baumann U, Buche P, Cooper L, Ćwiek-Kupczyńska H, Davey RP, Fulss RA, Jonquet C, Laporte MA, Larmande P, Pommier C, Protonotarios V, Reverte C, Shrestha R, Subirats I, Venkatesan A, Whan A, Quesneville H. Dzale Yeumo E, et al. F1000Res. 2017 Oct 16;6:1843. doi: 10.12688/f1000research.12234.2. eCollection 2017. F1000Res. 2017. PMID: 29333241 Free PMC article.
Measures for interoperability of phenotypic data: minimum information requirements and formatting.
Ćwiek-Kupczyńska H, Altmann T, Arend D, Arnaud E, Chen D, Cornut G, Fiorani F, Frohmberg W, Junker A, Klukas C, Lange M, Mazurek C, Nafissi A, Neveu P, van Oeveren J, Pommier C, Poorter H, Rocca-Serra P, Sansone SA, Scholz U, van Schriek M, Seren Ü, Usadel B, Weise S, Kersey P, Krajewski P. Ćwiek-Kupczyńska H, et al. Plant Methods. 2016 Nov 9;12:44. doi: 10.1186/s13007-016-0144-4. eCollection 2016. Plant Methods. 2016. PMID: 27843484 Free PMC article.
Enabling reusability of plant phenomic datasets with MIAPPE 1.1.
Papoutsoglou EA, Faria D, Arend D, Arnaud E, Athanasiadis IN, Chaves I, Coppens F, Cornut G, Costa BV, Ćwiek-Kupczyńska H, Droesbeke B, Finkers R, Gruden K, Junker A, King GJ, Krajewski P, Lange M, Laporte MA, Michotey C, Oppermann M, Ostler R, Poorter H, Ramı Rez-Gonzalez R, Ramšak Ž, Reif JC, Rocca-Serra P, Sansone SA, Scholz U, Tardieu F, Uauy C, Usadel B, Visser RGF, Weise S, Kersey PJ, Miguel CM, Adam-Blondon AF, Pommier C. Papoutsoglou EA, et al. Among authors: cwiek kupczynska h. New Phytol. 2020 Jul;227(1):260-273. doi: 10.1111/nph.16544. Epub 2020 Apr 25. New Phytol. 2020. PMID: 32171029 Free PMC article.
Image Phenotyping of Spring Barley (Hordeum vulgare L.) RIL Population Under Drought: Selection of Traits and Biological Interpretation.
Mikołajczak K, Ogrodowicz P, Ćwiek-Kupczyńska H, Weigelt-Fischer K, Mothukuri SR, Junker A, Altmann T, Krystkowiak K, Adamski T, Surma M, Kuczyńska A, Krajewski P. Mikołajczak K, et al. Among authors: cwiek kupczynska h. Front Plant Sci. 2020 Jun 9;11:743. doi: 10.3389/fpls.2020.00743. eCollection 2020. Front Plant Sci. 2020. PMID: 32582262 Free PMC article.
Semantic concept schema of the linear mixed model of experimental observations.
Ćwiek-Kupczyńska H, Filipiak K, Markiewicz A, Rocca-Serra P, Gonzalez-Beltran AN, Sansone SA, Millet EJ, van Eeuwijk F, Ławrynowicz A, Krajewski P. Ćwiek-Kupczyńska H, et al. Sci Data. 2020 Feb 27;7(1):70. doi: 10.1038/s41597-020-0409-7. Sci Data. 2020. PMID: 32109232 Free PMC article.
Innovative transcriptome-based genotyping highlights environmentally responsive genes for phenology, growth and yield in a non-model grain legume.
Plewiński P, Ćwiek-Kupczyńska H, Rudy E, Bielski W, Rychel-Bielska S, Stawiński S, Barzyk P, Krajewski P, Naganowska B, Wolko B, Książkiewicz M. Plewiński P, et al. Among authors: cwiek kupczynska h. Plant Cell Environ. 2020 Nov;43(11):2680-2698. doi: 10.1111/pce.13880. Epub 2020 Sep 23. Plant Cell Environ. 2020. PMID: 32885839 Free article.
High-throughput sequencing data revealed genotype-specific changes evoked by heat stress in crown tissue of barley sdw1 near-isogenic lines.
Mikołajczak K, Kuczyńska A, Ogrodowicz P, Kiełbowicz-Matuk A, Ćwiek-Kupczyńska H, Daszkowska-Golec A, Szarejko I, Surma M, Krajewski P. Mikołajczak K, et al. Among authors: cwiek kupczynska h. BMC Genomics. 2022 Mar 4;23(1):177. doi: 10.1186/s12864-022-08410-1. BMC Genomics. 2022. PMID: 35246029 Free PMC article.
Mapping of quantitative trait loci for traits linked to fusarium head blight in barley.
Ogrodowicz P, Kuczyńska A, Mikołajczak K, Adamski T, Surma M, Krajewski P, Ćwiek-Kupczyńska H, Kempa M, Rokicki M, Jasińska D. Ogrodowicz P, et al. Among authors: cwiek kupczynska h. PLoS One. 2020 Feb 4;15(2):e0222375. doi: 10.1371/journal.pone.0222375. eCollection 2020. PLoS One. 2020. PMID: 32017768 Free PMC article.
Suppressive Effect of Trichoderma spp. on toxigenic Fusarium species.
Błaszczyk L, Basińska-Barczak A, Ćwiek-Kupczyńska H, Gromadzka K, Popiel D, Stępień Ł. Błaszczyk L, et al. Pol J Microbiol. 2017 Mar 30;66(1):85-100. doi: 10.5604/17331331.1234996. Pol J Microbiol. 2017. PMID: 29359702 Free article.
13 results