Risso D - Search Results

1

Learning-dependent chromatin remodeling highlights noncoding regulatory regions linked to autism.

Koberstein JN, Poplawski SG, Wimmer ME, Porcari G, Kao C, Gomes B, Risso D, Hakonarson H, Zhang NR, Schultz RT, Abel T, Peixoto L. Koberstein JN, et al. Among authors: risso d. Sci Signal. 2018 Jan 16;11(513):eaan6500. doi: 10.1126/scisignal.aan6500. Sci Signal. 2018. PMID: 29339533 Free PMC article.

2

How data analysis affects power, reproducibility and biological insight of RNA-seq studies in complex datasets.

Peixoto L, Risso D, Poplawski SG, Wimmer ME, Speed TP, Wood MA, Abel T. Peixoto L, et al. Among authors: risso d. Nucleic Acids Res. 2015 Sep 18;43(16):7664-74. doi: 10.1093/nar/gkv736. Epub 2015 Jul 21. Nucleic Acids Res. 2015. PMID: 26202970 Free PMC article.

3

Contextual fear conditioning induces differential alternative splicing.

Poplawski SG, Peixoto L, Porcari GS, Wimmer ME, McNally AG, Mizuno K, Giese KP, Chatterjee S, Koberstein JN, Risso D, Speed TP, Abel T. Poplawski SG, et al. Among authors: risso d. Neurobiol Learn Mem. 2016 Oct;134 Pt B(Pt B):221-35. doi: 10.1016/j.nlm.2016.07.018. Epub 2016 Jul 20. Neurobiol Learn Mem. 2016. PMID: 27451143 Free PMC article.

4

Removal of unwanted variation reveals novel patterns of gene expression linked to sleep homeostasis in murine cortex.

Gerstner JR, Koberstein JN, Watson AJ, Zapero N, Risso D, Speed TP, Frank MG, Peixoto L. Gerstner JR, et al. Among authors: risso d. BMC Genomics. 2016 Oct 25;17(Suppl 8):727. doi: 10.1186/s12864-016-3065-8. BMC Genomics. 2016. PMID: 27801296 Free PMC article.

5

Shank3 modulates sleep and expression of circadian transcription factors.

Ingiosi AM, Schoch H, Wintler T, Singletary KG, Righelli D, Roser LG, Medina E, Risso D, Frank MG, Peixoto L. Ingiosi AM, et al. Among authors: risso d. Elife. 2019 Apr 11;8:e42819. doi: 10.7554/eLife.42819. Elife. 2019. PMID: 30973326 Free PMC article.

6

A Global Transcriptional Atlas of the Effect of Sleep Deprivation in the Mouse Frontal Cortex.

Ford K, Zuin E, Righelli D, Medina E, Schoch H, Singletary K, Muheim C, Frank MG, Hicks SC, Risso D, Peixoto L. Ford K, et al. Among authors: risso d. bioRxiv [Preprint]. 2023 Nov 28:2023.11.28.569011. doi: 10.1101/2023.11.28.569011. bioRxiv. 2023. Update in: iScience. 2024 Aug 17;27(9):110752. doi: 10.1016/j.isci.2024.110752 PMID: 38076891 Free PMC article. Updated. Preprint.

7

A global transcriptional atlas of the effect of acute sleep deprivation in the mouse frontal cortex.

Ford K, Zuin E, Righelli D, Medina E, Schoch H, Singletary K, Muheim C, Frank MG, Hicks SC, Risso D, Peixoto L. Ford K, et al. Among authors: risso d. iScience. 2024 Aug 17;27(9):110752. doi: 10.1016/j.isci.2024.110752. eCollection 2024 Sep 20. iScience. 2024. PMID: 39280614 Free PMC article.

8

Observation weights unlock bulk RNA-seq tools for zero inflation and single-cell applications.

Van den Berge K, Perraudeau F, Soneson C, Love MI, Risso D, Vert JP, Robinson MD, Dudoit S, Clement L. Van den Berge K, et al. Among authors: risso d. Genome Biol. 2018 Feb 26;19(1):24. doi: 10.1186/s13059-018-1406-4. Genome Biol. 2018. PMID: 29478411 Free PMC article.

9

GC-content normalization for RNA-Seq data.

Risso D, Schwartz K, Sherlock G, Dudoit S. Risso D, et al. BMC Bioinformatics. 2011 Dec 17;12:480. doi: 10.1186/1471-2105-12-480. BMC Bioinformatics. 2011. PMID: 22177264 Free PMC article.

10

Combinatorial Expression of Grp and Neurod6 Defines Dopamine Neuron Populations with Distinct Projection Patterns and Disease Vulnerability.

Kramer DJ, Risso D, Kosillo P, Ngai J, Bateup HS. Kramer DJ, et al. Among authors: risso d. eNeuro. 2018 Jun 13;5(3):ENEURO.0152-18.2018. doi: 10.1523/ENEURO.0152-18.2018. eCollection 2018 May-Jun. eNeuro. 2018. PMID: 30135866 Free PMC article.

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