Thomas DG - Search Results

1

ISD3: a particokinetic model for predicting the combined effects of particle sedimentation, diffusion and dissolution on cellular dosimetry for in vitro systems.

Thomas DG, Smith JN, Thrall BD, Baer DR, Jolley H, Munusamy P, Kodali V, Demokritou P, Cohen J, Teeguarden JG. Thomas DG, et al. Part Fibre Toxicol. 2018 Jan 25;15(1):6. doi: 10.1186/s12989-018-0243-7. Part Fibre Toxicol. 2018. PMID: 29368623 Free PMC article.

2

All that is silver is not toxic: silver ion and particle kinetics reveals the role of silver ion aging and dosimetry on the toxicity of silver nanoparticles.

Smith JN, Thomas DG, Jolley H, Kodali VK, Littke MH, Munusamy P, Baer DR, Gaffrey MJ, Thrall BD, Teeguarden JG. Smith JN, et al. Among authors: thomas dg. Part Fibre Toxicol. 2018 Dec 5;15(1):47. doi: 10.1186/s12989-018-0283-z. Part Fibre Toxicol. 2018. PMID: 30518385 Free PMC article.

3

ISiCLE: A Quantum Chemistry Pipeline for Establishing in Silico Collision Cross Section Libraries.

Colby SM, Thomas DG, Nuñez JR, Baxter DJ, Glaesemann KR, Brown JM, Pirrung MA, Govind N, Teeguarden JG, Metz TO, Renslow RS. Colby SM, et al. Among authors: thomas dg. Anal Chem. 2019 Apr 2;91(7):4346-4356. doi: 10.1021/acs.analchem.8b04567. Epub 2019 Mar 6. Anal Chem. 2019. PMID: 30741529 Free PMC article.

4

Block Design with Common Reference Samples Enables Robust Large-Scale Label-Free Quantitative Proteome Profiling.

Zhang T, Gaffrey MJ, Monroe ME, Thomas DG, Weitz KK, Piehowski PD, Petyuk VA, Moore RJ, Thrall BD, Qian WJ. Zhang T, et al. Among authors: thomas dg. J Proteome Res. 2020 Jul 2;19(7):2863-2872. doi: 10.1021/acs.jproteome.0c00310. Epub 2020 May 22. J Proteome Res. 2020. PMID: 32407631 Free PMC article.

5

A proteome-wide assessment of the oxidative stress paradigm for metal and metal-oxide nanomaterials in human macrophages.

Zhang T, Gaffrey MJ, Thomas DG, Weber TJ, Hess BM, Weitz KK, Piehowski PD, Petyuk VA, Moore RJ, Qian WJ, Thrall BD. Zhang T, et al. Among authors: thomas dg. NanoImpact. 2020 Jan;17:10.1016/j.impact.2019.100194. doi: 10.1016/j.impact.2019.100194. Epub 2019 Nov 23. NanoImpact. 2020. PMID: 32133426 Free PMC article.

6

SPE-IMS-MS: An automated platform for sub-sixty second surveillance of endogenous metabolites and xenobiotics in biofluids.

Zhang X, Romm M, Zheng X, Zink EM, Kim YM, Burnum-Johnson KE, Orton DJ, Apffel A, Ibrahim YM, Monroe ME, Moore RJ, Smith JN, Ma J, Renslow RS, Thomas DG, Blackwell AE, Swinford G, Sausen J, Kurulugama RT, Eno N, Darland E, Stafford G, Fjeldsted J, Metz TO, Teeguarden JG, Smith RD, Baker ES. Zhang X, et al. Among authors: thomas dg. Clin Mass Spectrom. 2016 Dec;2:1-10. doi: 10.1016/j.clinms.2016.11.002. Epub 2016 Dec 29. Clin Mass Spectrom. 2016. PMID: 29276770 Free PMC article.

7

Evaluation of In Silico Multifeature Libraries for Providing Evidence for the Presence of Small Molecules in Synthetic Blinded Samples.

Nuñez JR, Colby SM, Thomas DG, Tfaily MM, Tolic N, Ulrich EM, Sobus JR, Metz TO, Teeguarden JG, Renslow RS. Nuñez JR, et al. Among authors: thomas dg. J Chem Inf Model. 2019 Sep 23;59(9):4052-4060. doi: 10.1021/acs.jcim.9b00444. Epub 2019 Aug 20. J Chem Inf Model. 2019. PMID: 31430141 Free PMC article.

8

Integrating ion mobility spectrometry into mass spectrometry-based exposome measurements: what can it add and how far can it go?

Metz TO, Baker ES, Schymanski EL, Renslow RS, Thomas DG, Causon TJ, Webb IK, Hann S, Smith RD, Teeguarden JG. Metz TO, et al. Among authors: thomas dg. Bioanalysis. 2017 Jan;9(1):81-98. doi: 10.4155/bio-2016-0244. Bioanalysis. 2017. PMID: 27921453 Free PMC article.

9

An automated framework for NMR chemical shift calculations of small organic molecules.

Yesiltepe Y, Nuñez JR, Colby SM, Thomas DG, Borkum MI, Reardon PN, Washton NM, Metz TO, Teeguarden JG, Govind N, Renslow RS. Yesiltepe Y, et al. Among authors: thomas dg. J Cheminform. 2018 Oct 26;10(1):52. doi: 10.1186/s13321-018-0305-8. J Cheminform. 2018. PMID: 30367288 Free PMC article.

10

PIXiE: an algorithm for automated ion mobility arrival time extraction and collision cross section calculation using global data association.

Ma J, Casey CP, Zheng X, Ibrahim YM, Wilkins CS, Renslow RS, Thomas DG, Payne SH, Monroe ME, Smith RD, Teeguarden JG, Baker ES, Metz TO. Ma J, et al. Among authors: thomas dg. Bioinformatics. 2017 Sep 1;33(17):2715-2722. doi: 10.1093/bioinformatics/btx305. Bioinformatics. 2017. PMID: 28505286 Free PMC article.

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