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14-3-3-Pred: improved methods to predict 14-3-3-binding phosphopeptides.
Madeira F, Tinti M, Murugesan G, Berrett E, Stafford M, Toth R, Cole C, MacKintosh C, Barton GJ. Madeira F, et al. Bioinformatics. 2015 Jul 15;31(14):2276-83. doi: 10.1093/bioinformatics/btv133. Epub 2015 Mar 3. Bioinformatics. 2015. PMID: 25735772 Free PMC article.
The Dundee Resource for Sequence Analysis and Structure Prediction.
MacGowan SA, Madeira F, Britto-Borges T, Warowny M, Drozdetskiy A, Procter JB, Barton GJ. MacGowan SA, et al. Among authors: madeira f. Protein Sci. 2020 Jan;29(1):277-297. doi: 10.1002/pro.3783. Epub 2019 Nov 28. Protein Sci. 2020. PMID: 31710725 Free PMC article.
InterPro in 2019: improving coverage, classification and access to protein sequence annotations.
Mitchell AL, Attwood TK, Babbitt PC, Blum M, Bork P, Bridge A, Brown SD, Chang HY, El-Gebali S, Fraser MI, Gough J, Haft DR, Huang H, Letunic I, Lopez R, Luciani A, Madeira F, Marchler-Bauer A, Mi H, Natale DA, Necci M, Nuka G, Orengo C, Pandurangan AP, Paysan-Lafosse T, Pesseat S, Potter SC, Qureshi MA, Rawlings ND, Redaschi N, Richardson LJ, Rivoire C, Salazar GA, Sangrador-Vegas A, Sigrist CJA, Sillitoe I, Sutton GG, Thanki N, Thomas PD, Tosatto SCE, Yong SY, Finn RD. Mitchell AL, et al. Among authors: madeira f. Nucleic Acids Res. 2019 Jan 8;47(D1):D351-D360. doi: 10.1093/nar/gky1100. Nucleic Acids Res. 2019. PMID: 30398656 Free PMC article.
Recommendations for the packaging and containerizing of bioinformatics software.
Gruening B, Sallou O, Moreno P, da Veiga Leprevost F, Ménager H, Søndergaard D, Röst H, Sachsenberg T, O'Connor B, Madeira F, Dominguez Del Angel V, Crusoe MR, Varma S, Blankenberg D, Jimenez RC; BioContainers Community; Perez-Riverol Y. Gruening B, et al. Among authors: madeira f. F1000Res. 2018 Jun 14;7:ISCB Comm J-742. doi: 10.12688/f1000research.15140.2. eCollection 2018. F1000Res. 2018. PMID: 31543945 Free PMC article.
134 results