Wang K - Search Results

1

PennDiff: detecting differential alternative splicing and transcription by RNA sequencing.

Hu Y, Lin J, Hu J, Hu G, Wang K, Zhang H, Reilly MP, Li M. Hu Y, et al. Among authors: wang k. Bioinformatics. 2018 Jul 15;34(14):2384-2391. doi: 10.1093/bioinformatics/bty097. Bioinformatics. 2018. PMID: 29474557 Free PMC article.

2

PDID: database of molecular-level putative protein-drug interactions in the structural human proteome.

Wang C, Hu G, Wang K, Brylinski M, Xie L, Kurgan L. Wang C, et al. Among authors: wang k. Bioinformatics. 2016 Feb 15;32(4):579-86. doi: 10.1093/bioinformatics/btv597. Epub 2015 Oct 26. Bioinformatics. 2016. PMID: 26504143 Free PMC article.

3

Deep learning enables accurate clustering with batch effect removal in single-cell RNA-seq analysis.

Li X, Wang K, Lyu Y, Pan H, Zhang J, Stambolian D, Susztak K, Reilly MP, Hu G, Li M. Li X, et al. Among authors: wang k. Nat Commun. 2020 May 11;11(1):2338. doi: 10.1038/s41467-020-15851-3. Nat Commun. 2020. PMID: 32393754 Free PMC article.

4

A joint deep learning model enables simultaneous batch effect correction, denoising, and clustering in single-cell transcriptomics.

Lakkis J, Wang D, Zhang Y, Hu G, Wang K, Pan H, Ungar L, Reilly MP, Li X, Li M. Lakkis J, et al. Among authors: wang k, wang d. Genome Res. 2021 Oct;31(10):1753-1766. doi: 10.1101/gr.271874.120. Epub 2021 May 25. Genome Res. 2021. PMID: 34035047 Free PMC article.

5

Propensity score matching enables batch-effect-corrected imputation in single-cell RNA-seq analysis.

Xu X, Yu X, Hu G, Wang K, Zhang J, Li X. Xu X, et al. Among authors: wang k. Brief Bioinform. 2022 Jul 18;23(4):bbac275. doi: 10.1093/bib/bbac275. Brief Bioinform. 2022. PMID: 35821114

6

Implication of specific retinal cell-type involvement and gene expression changes in AMD progression using integrative analysis of single-cell and bulk RNA-seq profiling.

Lyu Y, Zauhar R, Dana N, Strang CE, Hu J, Wang K, Liu S, Pan N, Gamlin P, Kimble JA, Messinger JD, Curcio CA, Stambolian D, Li M. Lyu Y, et al. Among authors: wang k. Sci Rep. 2021 Aug 2;11(1):15612. doi: 10.1038/s41598-021-95122-3. Sci Rep. 2021. PMID: 34341398 Free PMC article.

7

Human structural proteome-wide characterization of Cyclosporine A targets.

Hu G, Wang K, Groenendyk J, Barakat K, Mizianty MJ, Ruan J, Michalak M, Kurgan L. Hu G, et al. Among authors: wang k. Bioinformatics. 2014 Dec 15;30(24):3561-6. doi: 10.1093/bioinformatics/btu581. Epub 2014 Aug 28. Bioinformatics. 2014. PMID: 25172926 Free PMC article.

8

Comprehensive Survey and Comparative Assessment of RNA-Binding Residue Predictions with Analysis by RNA Type.

Wang K, Hu G, Wu Z, Su H, Yang J, Kurgan L. Wang K, et al. Int J Mol Sci. 2020 Sep 19;21(18):6879. doi: 10.3390/ijms21186879. Int J Mol Sci. 2020. PMID: 32961749 Free PMC article. Review.

9

On the evolution rate in mammalian mitochondrial genomes.

Hu G, Shen S, Wang K. Hu G, et al. Among authors: wang k. Comput Biol Chem. 2011 Jun;35(3):137-42. doi: 10.1016/j.compbiolchem.2011.04.001. Epub 2011 Apr 27. Comput Biol Chem. 2011. PMID: 21704259

10

An accurate method for prediction of protein-ligand binding site on protein surface using SVM and statistical depth function.

Wang K, Gao J, Shen S, Tuszynski JA, Ruan J, Hu G. Wang K, et al. Biomed Res Int. 2013;2013:409658. doi: 10.1155/2013/409658. Epub 2013 Sep 30. Biomed Res Int. 2013. PMID: 24195070 Free PMC article.

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