Yamanaka M - Search Results

1

Construction of a Triangle-Shaped Trimer and a Tetrahedron Using an α-Helix-Inserted Circular Permutant of Cytochrome c₅₅₅.

Oda A, Nagao S, Yamanaka M, Ueda I, Watanabe H, Uchihashi T, Shibata N, Higuchi Y, Hirota S. Oda A, et al. Among authors: yamanaka m. Chem Asian J. 2018 Apr 16;13(8):964-967. doi: 10.1002/asia.201800252. Epub 2018 Mar 15. Chem Asian J. 2018. PMID: 29484831

2

Formation of domain-swapped oligomer of cytochrome C from its molten globule state oligomer.

Deshpande MS, Parui PP, Kamikubo H, Yamanaka M, Nagao S, Komori H, Kataoka M, Higuchi Y, Hirota S. Deshpande MS, et al. Among authors: yamanaka m. Biochemistry. 2014 Jul 22;53(28):4696-703. doi: 10.1021/bi500497s. Epub 2014 Jul 9. Biochemistry. 2014. PMID: 24981551

3

DNA cleavage by oxymyoglobin and cysteine-introduced metmyoglobin.

Deshpande MS, Junedi S, Prakash H, Nagao S, Yamanaka M, Hirota S. Deshpande MS, et al. Among authors: yamanaka m. Chem Commun (Camb). 2014 Dec 11;50(95):15034-6. doi: 10.1039/c4cc06617k. Chem Commun (Camb). 2014. PMID: 25327831

4

Change in structure and ligand binding properties of hyperstable cytochrome c555 from Aquifex aeolicus by domain swapping.

Yamanaka M, Nagao S, Komori H, Higuchi Y, Hirota S. Yamanaka M, et al. Protein Sci. 2015 Mar;24(3):366-75. doi: 10.1002/pro.2627. Epub 2015 Jan 14. Protein Sci. 2015. PMID: 25586341 Free PMC article.

5

Oligomerization enhancement and two domain swapping mode detection for thermostable cytochrome c552 via the elongation of the major hinge loop.

Ren C, Nagao S, Yamanaka M, Komori H, Shomura Y, Higuchi Y, Hirota S. Ren C, et al. Among authors: yamanaka m. Mol Biosyst. 2015 Dec;11(12):3218-21. doi: 10.1039/c5mb00545k. Mol Biosyst. 2015. PMID: 26451671

6

Domain swapping oligomerization of thermostable c-type cytochrome in E. coli cells.

Hayashi Y, Yamanaka M, Nagao S, Komori H, Higuchi Y, Hirota S. Hayashi Y, et al. Among authors: yamanaka m. Sci Rep. 2016 Feb 3;6:19334. doi: 10.1038/srep19334. Sci Rep. 2016. PMID: 26838805 Free PMC article.

7

Formation and carbon monoxide-dependent dissociation of Allochromatium vinosum cytochrome c' oligomers using domain-swapped dimers.

Yamanaka M, Hoshizumi M, Nagao S, Nakayama R, Shibata N, Higuchi Y, Hirota S. Yamanaka M, et al. Protein Sci. 2017 Mar;26(3):464-474. doi: 10.1002/pro.3090. Epub 2017 Feb 14. Protein Sci. 2017. PMID: 27883268 Free PMC article.

8

Rational Design of Domain-Swapping-Based c-Type Cytochrome Heterodimers by Using Chimeric Proteins.

Zhang M, Nakanishi T, Yamanaka M, Nagao S, Yanagisawa S, Shomura Y, Shibata N, Ogura T, Higuchi Y, Hirota S. Zhang M, et al. Among authors: yamanaka m. Chembiochem. 2017 Sep 5;18(17):1712-1715. doi: 10.1002/cbic.201700219. Epub 2017 Jul 21. Chembiochem. 2017. PMID: 28660650

9

Oxidative modification of methionine80 in cytochrome c by reaction with peroxides.

Nugraheni AD, Ren C, Matsumoto Y, Nagao S, Yamanaka M, Hirota S. Nugraheni AD, et al. Among authors: yamanaka m. J Inorg Biochem. 2018 May;182:200-207. doi: 10.1016/j.jinorgbio.2018.02.017. Epub 2018 Feb 24. J Inorg Biochem. 2018. PMID: 29510335

10

Domain-Swapping Design by Polyproline Rod Insertion.

Shiga S, Yamanaka M, Fujiwara W, Hirota S, Goda S, Makabe K. Shiga S, et al. Among authors: yamanaka m. Chembiochem. 2019 Oct 1;20(19):2454-2457. doi: 10.1002/cbic.201900179. Epub 2019 Sep 17. Chembiochem. 2019. PMID: 31094059

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