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YY1 Positively Regulates Transcription by Targeting Promoters and Super-Enhancers through the BAF Complex in Embryonic Stem Cells.
Wang J, Wu X, Wei C, Huang X, Ma Q, Huang X, Faiola F, Guallar D, Fidalgo M, Huang T, Peng D, Chen L, Yu H, Li X, Sun J, Liu X, Cai X, Chen X, Wang L, Ren J, Wang J, Ding J. Wang J, et al. Among authors: liu x. Stem Cell Reports. 2018 Apr 10;10(4):1324-1339. doi: 10.1016/j.stemcr.2018.02.004. Epub 2018 Mar 1. Stem Cell Reports. 2018. PMID: 29503092 Free PMC article.
Phase separation of OCT4 controls TAD reorganization to promote cell fate transitions.
Wang J, Yu H, Ma Q, Zeng P, Wu D, Hou Y, Liu X, Jia L, Sun J, Chen Y, Guallar D, Fidalgo M, Chen J, Yu Y, Jiang S, Li F, Zhao C, Huang X, Wang J, Li C, Sun Y, Zeng X, Zhang W, Miao Y, Ding J. Wang J, et al. Among authors: liu x. Cell Stem Cell. 2021 Oct 7;28(10):1868-1883.e11. doi: 10.1016/j.stem.2021.04.023. Epub 2021 May 25. Cell Stem Cell. 2021. PMID: 34038708 Free article.
CTCF organizes inter-A compartment interactions through RYBP-dependent phase separation.
Wei C, Jia L, Huang X, Tan J, Wang M, Niu J, Hou Y, Sun J, Zeng P, Wang J, Qing L, Ma L, Liu X, Tang X, Li F, Jiang S, Liu J, Li T, Fan L, Sun Y, Gao J, Li C, Ding J. Wei C, et al. Among authors: liu j, liu x. Cell Res. 2022 Aug;32(8):744-760. doi: 10.1038/s41422-022-00676-0. Epub 2022 Jun 29. Cell Res. 2022. PMID: 35768498 Free PMC article.
Precise prediction of phase-separation key residues by machine learning.
Sun J, Qu J, Zhao C, Zhang X, Liu X, Wang J, Wei C, Liu X, Wang M, Zeng P, Tang X, Ling X, Qing L, Jiang S, Chen J, Chen TSR, Kuang Y, Gao J, Zeng X, Huang D, Yuan Y, Fan L, Yu H, Ding J. Sun J, et al. Among authors: liu x. Nat Commun. 2024 Mar 26;15(1):2662. doi: 10.1038/s41467-024-46901-9. Nat Commun. 2024. PMID: 38531854 Free PMC article.
Nuclear remodeling during cell fate transitions.
Liu X, Ling X, Tian Q, Huang Z, Ding J. Liu X, et al. Curr Opin Genet Dev. 2024 Dec 3;90:102287. doi: 10.1016/j.gde.2024.102287. Online ahead of print. Curr Opin Genet Dev. 2024. PMID: 39631291 Review.
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