Weber CR - Search Results

1

Computational Strategies for Dissecting the High-Dimensional Complexity of Adaptive Immune Repertoires.

Miho E, Yermanos A, Weber CR, Berger CT, Reddy ST, Greiff V. Miho E, et al. Among authors: weber cr. Front Immunol. 2018 Feb 21;9:224. doi: 10.3389/fimmu.2018.00224. eCollection 2018. Front Immunol. 2018. PMID: 29515569 Free PMC article. Review.

2

Systems Analysis Reveals High Genetic and Antigen-Driven Predetermination of Antibody Repertoires throughout B Cell Development.

Greiff V, Menzel U, Miho E, Weber C, Riedel R, Cook S, Valai A, Lopes T, Radbruch A, Winkler TH, Reddy ST. Greiff V, et al. Cell Rep. 2017 May 16;19(7):1467-1478. doi: 10.1016/j.celrep.2017.04.054. Cell Rep. 2017. PMID: 28514665 Free article.

3

Learning the High-Dimensional Immunogenomic Features That Predict Public and Private Antibody Repertoires.

Greiff V, Weber CR, Palme J, Bodenhofer U, Miho E, Menzel U, Reddy ST. Greiff V, et al. Among authors: weber cr. J Immunol. 2017 Oct 15;199(8):2985-2997. doi: 10.4049/jimmunol.1700594. Epub 2017 Sep 18. J Immunol. 2017. PMID: 28924003

4

High-throughput antibody engineering in mammalian cells by CRISPR/Cas9-mediated homology-directed mutagenesis.

Mason DM, Weber CR, Parola C, Meng SM, Greiff V, Kelton WJ, Reddy ST. Mason DM, et al. Among authors: weber cr. Nucleic Acids Res. 2018 Aug 21;46(14):7436-7449. doi: 10.1093/nar/gky550. Nucleic Acids Res. 2018. PMID: 29931269 Free PMC article.

5

immuneSIM: tunable multi-feature simulation of B- and T-cell receptor repertoires for immunoinformatics benchmarking.

Weber CR, Akbar R, Yermanos A, Pavlović M, Snapkov I, Sandve GK, Reddy ST, Greiff V. Weber CR, et al. Bioinformatics. 2020 Jun 1;36(11):3594-3596. doi: 10.1093/bioinformatics/btaa158. Bioinformatics. 2020. PMID: 32154832 Free PMC article.

6

A compact vocabulary of paratope-epitope interactions enables predictability of antibody-antigen binding.

Akbar R, Robert PA, Pavlović M, Jeliazkov JR, Snapkov I, Slabodkin A, Weber CR, Scheffer L, Miho E, Haff IH, Haug DTT, Lund-Johansen F, Safonova Y, Sandve GK, Greiff V. Akbar R, et al. Among authors: weber cr. Cell Rep. 2021 Mar 16;34(11):108856. doi: 10.1016/j.celrep.2021.108856. Cell Rep. 2021. PMID: 33730590 Free article.

7

The Future of Blood Testing Is the Immunome.

Arnaout RA, Prak ETL, Schwab N, Rubelt F; Adaptive Immune Receptor Repertoire Community. Arnaout RA, et al. Front Immunol. 2021 Mar 15;12:626793. doi: 10.3389/fimmu.2021.626793. eCollection 2021. Front Immunol. 2021. PMID: 33790897 Free PMC article.

8

Optimization of therapeutic antibodies by predicting antigen specificity from antibody sequence via deep learning.

Mason DM, Friedensohn S, Weber CR, Jordi C, Wagner B, Meng SM, Ehling RA, Bonati L, Dahinden J, Gainza P, Correia BE, Reddy ST. Mason DM, et al. Among authors: weber cr. Nat Biomed Eng. 2021 Jun;5(6):600-612. doi: 10.1038/s41551-021-00699-9. Epub 2021 Apr 15. Nat Biomed Eng. 2021. PMID: 33859386

9

Platypus: an open-access software for integrating lymphocyte single-cell immune repertoires with transcriptomes.

Yermanos A, Agrafiotis A, Kuhn R, Robbiani D, Yates J, Papadopoulou C, Han J, Sandu I, Weber C, Bieberich F, Vazquez-Lombardi R, Dounas A, Neumeier D, Oxenius A, Reddy ST. Yermanos A, et al. NAR Genom Bioinform. 2021 Apr 14;3(2):lqab023. doi: 10.1093/nargab/lqab023. eCollection 2021 Jun. NAR Genom Bioinform. 2021. PMID: 33884369 Free PMC article.

10

A Single-Cell Atlas of Lymphocyte Adaptive Immune Repertoires and Transcriptomes Reveals Age-Related Differences in Convalescent COVID-19 Patients.

Bieberich F, Vazquez-Lombardi R, Yermanos A, Ehling RA, Mason DM, Wagner B, Kapetanovic E, Di Roberto RB, Weber CR, Savic M, Rudolf F, Reddy ST. Bieberich F, et al. Among authors: weber cr. Front Immunol. 2021 Jul 12;12:701085. doi: 10.3389/fimmu.2021.701085. eCollection 2021. Front Immunol. 2021. PMID: 34322127 Free PMC article.

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