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The sequence dependence of human nucleotide excision repair efficiencies of benzo[a]pyrene-derived DNA lesions: insights into the structural factors that favor dual incisions.
Kropachev K, Kolbanovskii M, Cai Y, Rodríguez F, Kolbanovskii A, Liu Y, Zhang L, Amin S, Patel D, Broyde S, Geacintov NE. Kropachev K, et al. Among authors: cai y. J Mol Biol. 2009 Mar 13;386(5):1193-203. doi: 10.1016/j.jmb.2008.12.082. Epub 2009 Jan 8. J Mol Biol. 2009. PMID: 19162041 Free PMC article.
Base flipping free energy profiles for damaged and undamaged DNA.
Zheng H, Cai Y, Ding S, Tang Y, Kropachev K, Zhou Y, Wang L, Wang S, Geacintov NE, Zhang Y, Broyde S. Zheng H, et al. Among authors: cai y. Chem Res Toxicol. 2010 Dec 20;23(12):1868-70. doi: 10.1021/tx1003613. Chem Res Toxicol. 2010. PMID: 21090780 Free PMC article.
Probing for DNA damage with β-hairpins: similarities in incision efficiencies of bulky DNA adducts by prokaryotic and human nucleotide excision repair systems in vitro.
Liu Y, Reeves D, Kropachev K, Cai Y, Ding S, Kolbanovskiy M, Kolbanovskiy A, Bolton JL, Broyde S, Van Houten B, Geacintov NE. Liu Y, et al. Among authors: cai y. DNA Repair (Amst). 2011 Jul 15;10(7):684-96. doi: 10.1016/j.dnarep.2011.04.020. Epub 2011 Jul 8. DNA Repair (Amst). 2011. PMID: 21741328 Free PMC article.
Resistance of bulky DNA lesions to nucleotide excision repair can result from extensive aromatic lesion-base stacking interactions.
Reeves DA, Mu H, Kropachev K, Cai Y, Ding S, Kolbanovskiy A, Kolbanovskiy M, Chen Y, Krzeminski J, Amin S, Patel DJ, Broyde S, Geacintov NE. Reeves DA, et al. Among authors: cai y. Nucleic Acids Res. 2011 Nov 1;39(20):8752-64. doi: 10.1093/nar/gkr537. Epub 2011 Jul 15. Nucleic Acids Res. 2011. PMID: 21764772 Free PMC article.
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