Choi JK - Search Results

1

Novel cancer gene variants and gene fusions of triple-negative breast cancers (TNBCs) reveal their molecular diversity conserved in the patient-derived xenograft (PDX) model.

Jung J, Jang K, Ju JM, Lee E, Lee JW, Kim HJ, Kim J, Lee SB, Ko BS, Son BH, Lee HJ, Gong G, Ahn SY, Choi JK, Singh SR, Chang S. Jung J, et al. Among authors: choi jk. Cancer Lett. 2018 Aug 1;428:127-138. doi: 10.1016/j.canlet.2018.04.020. Epub 2018 Apr 22. Cancer Lett. 2018. PMID: 29684420

2

Global transcription network incorporating distal regulator binding reveals selective cooperation of cancer drivers and risk genes.

Kim K, Yang W, Lee KS, Bang H, Jang K, Kim SC, Yang JO, Park S, Park K, Choi JK. Kim K, et al. Among authors: choi jk. Nucleic Acids Res. 2015 Jul 13;43(12):5716-29. doi: 10.1093/nar/gkv532. Epub 2015 May 22. Nucleic Acids Res. 2015. PMID: 26001967 Free PMC article.

3

Chromatin structure-based prediction of recurrent noncoding mutations in cancer.

Kim K, Jang K, Yang W, Choi EY, Park SM, Bae M, Kim YJ, Choi JK. Kim K, et al. Among authors: choi ey, choi jk. Nat Genet. 2016 Nov;48(11):1321-1326. doi: 10.1038/ng.3682. Epub 2016 Oct 10. Nat Genet. 2016. PMID: 27723759

4

Predicting the recurrence of noncoding regulatory mutations in cancer.

Yang W, Bang H, Jang K, Sung MK, Choi JK. Yang W, et al. Among authors: choi jk. BMC Bioinformatics. 2016 Dec 3;17(1):492. doi: 10.1186/s12859-016-1385-y. BMC Bioinformatics. 2016. PMID: 27912731 Free PMC article.

5

Network perturbation by recurrent regulatory variants in cancer.

Jang K, Kim K, Cho A, Lee I, Choi JK. Jang K, et al. Among authors: choi jk. PLoS Comput Biol. 2017 Mar 23;13(3):e1005449. doi: 10.1371/journal.pcbi.1005449. eCollection 2017 Mar. PLoS Comput Biol. 2017. PMID: 28333928 Free PMC article.

6

Computational inference of cancer-specific vulnerabilities in clinical samples.

Jang K, Park MJ, Park JS, Hwangbo H, Sung MK, Kim S, Jung J, Lee JW, Ahn SH, Chang S, Choi JK. Jang K, et al. Among authors: choi jk. Genome Biol. 2020 Jun 29;21(1):155. doi: 10.1186/s13059-020-02077-1. Genome Biol. 2020. PMID: 32600395 Free PMC article.

7

Aberrant Transcript Usage Is Associated with Homologous Recombination Deficiency and Predicts Therapeutic Response.

Kang HG, Hwangbo H, Kim MJ, Kim S, Lee EJ, Park MJ, Kim JW, Kim BG, Cho EH, Chang S, Lee JY, Choi JK. Kang HG, et al. Among authors: choi jk. Cancer Res. 2022 Jan 1;82(1):142-154. doi: 10.1158/0008-5472.CAN-21-2023. Epub 2021 Oct 28. Cancer Res. 2022. PMID: 34711610 Free PMC article.

8

MHC II immunogenicity shapes the neoepitope landscape in human tumors.

Kim JY, Cha H, Kim K, Sung C, An J, Bang H, Kim H, Yang JO, Chang S, Shin I, Noh SJ, Shin I, Cho DY, Lee SH, Choi JK. Kim JY, et al. Among authors: choi jk. Nat Genet. 2023 Feb;55(2):221-231. doi: 10.1038/s41588-022-01273-y. Epub 2023 Jan 9. Nat Genet. 2023. PMID: 36624345

9

Comprehensive molecular characterization of mitochondrial genomes in human cancers.

Yuan Y, Ju YS, Kim Y, Li J, Wang Y, Yoon CJ, Yang Y, Martincorena I, Creighton CJ, Weinstein JN, Xu Y, Han L, Kim HL, Nakagawa H, Park K, Campbell PJ, Liang H; PCAWG Consortium. Yuan Y, et al. Nat Genet. 2020 Mar;52(3):342-352. doi: 10.1038/s41588-019-0557-x. Epub 2020 Feb 5. Nat Genet. 2020. PMID: 32024997 Free PMC article.

10

Predictive long-range allele-specific mapping of regulatory variants and target transcripts.

Lee K, Lee S, Bang H, Choi JK. Lee K, et al. Among authors: choi jk. PLoS One. 2017 Apr 13;12(4):e0175768. doi: 10.1371/journal.pone.0175768. eCollection 2017. PLoS One. 2017. PMID: 28406955 Free PMC article.

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