Kandathil SM - Search Results

1

High precision in protein contact prediction using fully convolutional neural networks and minimal sequence features.

Jones DT, Kandathil SM. Jones DT, et al. Among authors: kandathil sm. Bioinformatics. 2018 Oct 1;34(19):3308-3315. doi: 10.1093/bioinformatics/bty341. Bioinformatics. 2018. PMID: 29718112 Free PMC article.

2

Prediction of interresidue contacts with DeepMetaPSICOV in CASP13.

Kandathil SM, Greener JG, Jones DT. Kandathil SM, et al. Proteins. 2019 Dec;87(12):1092-1099. doi: 10.1002/prot.25779. Epub 2019 Jul 27. Proteins. 2019. PMID: 31298436 Free PMC article.

3

Deep learning extends de novo protein modelling coverage of genomes using iteratively predicted structural constraints.

Greener JG, Kandathil SM, Jones DT. Greener JG, et al. Among authors: kandathil sm. Nat Commun. 2019 Sep 4;10(1):3977. doi: 10.1038/s41467-019-11994-0. Nat Commun. 2019. PMID: 31484923 Free PMC article.

4

Recent developments in deep learning applied to protein structure prediction.

Kandathil SM, Greener JG, Jones DT. Kandathil SM, et al. Proteins. 2019 Dec;87(12):1179-1189. doi: 10.1002/prot.25824. Epub 2019 Oct 14. Proteins. 2019. PMID: 31589782 Free PMC article.

5

A guide to machine learning for biologists.

Greener JG, Kandathil SM, Moffat L, Jones DT. Greener JG, et al. Among authors: kandathil sm. Nat Rev Mol Cell Biol. 2022 Jan;23(1):40-55. doi: 10.1038/s41580-021-00407-0. Epub 2021 Sep 13. Nat Rev Mol Cell Biol. 2022. PMID: 34518686 Review.

6

Ultrafast end-to-end protein structure prediction enables high-throughput exploration of uncharacterized proteins.

Kandathil SM, Greener JG, Lau AM, Jones DT. Kandathil SM, et al. Proc Natl Acad Sci U S A. 2022 Jan 25;119(4):e2113348119. doi: 10.1073/pnas.2113348119. Proc Natl Acad Sci U S A. 2022. PMID: 35074909 Free PMC article.

7

Machine learning methods for predicting protein structure from single sequences.

Kandathil SM, Lau AM, Jones DT. Kandathil SM, et al. Curr Opin Struct Biol. 2023 Aug;81:102627. doi: 10.1016/j.sbi.2023.102627. Epub 2023 Jun 13. Curr Opin Struct Biol. 2023. PMID: 37320955 Free article. Review.

8

Merizo: a rapid and accurate protein domain segmentation method using invariant point attention.

Lau AM, Kandathil SM, Jones DT. Lau AM, et al. Among authors: kandathil sm. Nat Commun. 2023 Dec 19;14(1):8445. doi: 10.1038/s41467-023-43934-4. Nat Commun. 2023. PMID: 38114456 Free PMC article.

9

Deep learning for the PSIPRED Protein Analysis Workbench.

Buchan DWA, Moffat L, Lau A, Kandathil SM, Jones DT. Buchan DWA, et al. Among authors: kandathil sm. Nucleic Acids Res. 2024 Jul 5;52(W1):W287-W293. doi: 10.1093/nar/gkae328. Nucleic Acids Res. 2024. PMID: 38747351 Free PMC article.

10

Exploring structural diversity across the protein universe with The Encyclopedia of Domains.

Lau AM, Bordin N, Kandathil SM, Sillitoe I, Waman VP, Wells J, Orengo CA, Jones DT. Lau AM, et al. Among authors: kandathil sm. Science. 2024 Nov;386(6721):eadq4946. doi: 10.1126/science.adq4946. Epub 2024 Nov 1. Science. 2024. PMID: 39480926

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