Touzet H - Search Results

1

DiNAMO: highly sensitive DNA motif discovery in high-throughput sequencing data.

Saad C, Noé L, Richard H, Leclerc J, Buisine MP, Touzet H, Figeac M. Saad C, et al. Among authors: touzet h. BMC Bioinformatics. 2018 Jun 11;19(1):223. doi: 10.1186/s12859-018-2215-1. BMC Bioinformatics. 2018. PMID: 29890948 Free PMC article.

2

Predicting transcription factor binding sites using local over-representation and comparative genomics.

Defrance M, Touzet H. Defrance M, et al. Among authors: touzet h. BMC Bioinformatics. 2006 Aug 31;7:396. doi: 10.1186/1471-2105-7-396. BMC Bioinformatics. 2006. PMID: 16945132 Free PMC article.

3

Computational identification of protein-coding sequences by comparative analysis.

Fontaine A, Touzet H. Fontaine A, et al. Among authors: touzet h. Int J Data Min Bioinform. 2009;3(2):160-76. doi: 10.1504/ijdmb.2009.024849. Int J Data Min Bioinform. 2009. PMID: 19517987

4

SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data.

Kopylova E, Noé L, Touzet H. Kopylova E, et al. Among authors: touzet h. Bioinformatics. 2012 Dec 15;28(24):3211-7. doi: 10.1093/bioinformatics/bts611. Epub 2012 Oct 15. Bioinformatics. 2012. PMID: 23071270 Free article.

5

Deciphering metatranscriptomic data.

Kopylova E, Noé L, Da Silva C, Berthelot JF, Alberti A, Aury JM, Touzet H. Kopylova E, et al. Among authors: touzet h. Methods Mol Biol. 2015;1269:279-91. doi: 10.1007/978-1-4939-2291-8_17. Methods Mol Biol. 2015. PMID: 25577385

6

MATAM: reconstruction of phylogenetic marker genes from short sequencing reads in metagenomes.

Pericard P, Dufresne Y, Couderc L, Blanquart S, Touzet H. Pericard P, et al. Among authors: touzet h. Bioinformatics. 2018 Feb 15;34(4):585-591. doi: 10.1093/bioinformatics/btx644. Bioinformatics. 2018. PMID: 29040406

7

Comparative assessment of long-read error correction software applied to Nanopore RNA-sequencing data.

Lima L, Marchet C, Caboche S, Da Silva C, Istace B, Aury JM, Touzet H, Chikhi R. Lima L, et al. Among authors: touzet h. Brief Bioinform. 2020 Jul 15;21(4):1164-1181. doi: 10.1093/bib/bbz058. Brief Bioinform. 2020. PMID: 31232449 Free article. Review.

8

Porechop_ABI: discovering unknown adapters in Oxford Nanopore Technology sequencing reads for downstream trimming.

Bonenfant Q, Noé L, Touzet H. Bonenfant Q, et al. Among authors: touzet h. Bioinform Adv. 2022 Nov 21;3(1):vbac085. doi: 10.1093/bioadv/vbac085. eCollection 2023. Bioinform Adv. 2022. PMID: 36698762 Free PMC article.

9

Alignments of RNA structures.

Blin G, Denise A, Dulucq S, Herrbach C, Touzet H. Blin G, et al. Among authors: touzet h. IEEE/ACM Trans Comput Biol Bioinform. 2010 Apr-Jun;7(2):309-22. doi: 10.1109/TCBB.2008.28. IEEE/ACM Trans Comput Biol Bioinform. 2010. PMID: 20431150 Free article.

10

RNA locally optimal secondary structures.

Saffarian A, Giraud M, de Monte A, Touzet H. Saffarian A, et al. Among authors: touzet h. J Comput Biol. 2012 Oct;19(10):1120-33. doi: 10.1089/cmb.2010.0178. J Comput Biol. 2012. PMID: 23057822

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