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Metaxa2 Database Builder: enabling taxonomic identification from metagenomic or metabarcoding data using any genetic marker.
Bengtsson-Palme J, Richardson RT, Meola M, Wurzbacher C, Tremblay ÉD, Thorell K, Kanger K, Eriksson KM, Bilodeau GJ, Johnson RM, Hartmann M, Nilsson RH. Bengtsson-Palme J, et al. Among authors: wurzbacher c. Bioinformatics. 2018 Dec 1;34(23):4027-4033. doi: 10.1093/bioinformatics/bty482. Bioinformatics. 2018. PMID: 29912385 Free PMC article.
Introducing ribosomal tandem repeat barcoding for fungi.
Wurzbacher C, Larsson E, Bengtsson-Palme J, Van den Wyngaert S, Svantesson S, Kristiansson E, Kagami M, Nilsson RH. Wurzbacher C, et al. Mol Ecol Resour. 2019 Jan;19(1):118-127. doi: 10.1111/1755-0998.12944. Epub 2018 Oct 24. Mol Ecol Resour. 2019. PMID: 30240145
The curse of the uncultured fungus.
Abarenkov K, Kristiansson E, Ryberg M, Nogal-Prata S, Gómez-Martínez D, Stüer-Patowsky K, Jansson T, Põlme S, Ghobad-Nejhad M, Corcoll N, Scharn R, Sánchez-García M, Khomich M, Wurzbacher C, Nilsson RH. Abarenkov K, et al. Among authors: wurzbacher c. MycoKeys. 2022 Feb 2;86:177-194. doi: 10.3897/mycokeys.86.76053. eCollection 2022. MycoKeys. 2022. PMID: 35153529 Free PMC article.
Evidence for further non-coding RNA genes in the fungal rDNA region.
Rosenblad MA, Larsson E, Walker A, Thongklang N, Wurzbacher C, Nilsson RH. Rosenblad MA, et al. Among authors: wurzbacher c. MycoKeys. 2022 Jun 30;90:203-213. doi: 10.3897/mycokeys.90.84866. eCollection 2022. MycoKeys. 2022. PMID: 36760425 Free PMC article.
How, not if, is the question mycologists should be asking about DNA-based typification.
Nilsson RH, Ryberg M, Wurzbacher C, Tedersoo L, Anslan S, Põlme S, Spirin V, Mikryukov V, Svantesson S, Hartmann M, Lennartsdotter C, Belford P, Khomich M, Retter A, Corcoll N, Gómez Martinez D, Jansson T, Ghobad-Nejhad M, Vu D, Sanchez-Garcia M, Kristiansson E, Abarenkov K. Nilsson RH, et al. Among authors: wurzbacher c. MycoKeys. 2023 Apr 10;96:143-157. doi: 10.3897/mycokeys.96.102669. eCollection 2023. MycoKeys. 2023. PMID: 37214179 Free PMC article.
54 results