DeWitt WS - Search Results

1

A Diverse Lipid Antigen-Specific TCR Repertoire Is Clonally Expanded during Active Tuberculosis.

DeWitt WS, Yu KKQ, Wilburn DB, Sherwood A, Vignali M, Day CL, Scriba TJ, Robins HS, Swanson WJ, Emerson RO, Bradley PH, Seshadri C. DeWitt WS, et al. J Immunol. 2018 Aug 1;201(3):888-896. doi: 10.4049/jimmunol.1800186. Epub 2018 Jun 18. J Immunol. 2018. PMID: 29914888 Free PMC article.

2

Dynamics of the cytotoxic T cell response to a model of acute viral infection.

DeWitt WS, Emerson RO, Lindau P, Vignali M, Snyder TM, Desmarais C, Sanders C, Utsugi H, Warren EH, McElrath J, Makar KW, Wald A, Robins HS. DeWitt WS, et al. J Virol. 2015 Apr;89(8):4517-26. doi: 10.1128/JVI.03474-14. Epub 2015 Feb 4. J Virol. 2015. PMID: 25653453 Free PMC article.

3

A Public Database of Memory and Naive B-Cell Receptor Sequences.

DeWitt WS, Lindau P, Snyder TM, Sherwood AM, Vignali M, Carlson CS, Greenberg PD, Duerkopp N, Emerson RO, Robins HS. DeWitt WS, et al. PLoS One. 2016 Aug 11;11(8):e0160853. doi: 10.1371/journal.pone.0160853. eCollection 2016. PLoS One. 2016. PMID: 27513338 Free PMC article.

4

Immunosequencing identifies signatures of cytomegalovirus exposure history and HLA-mediated effects on the T cell repertoire.

Emerson RO, DeWitt WS, Vignali M, Gravley J, Hu JK, Osborne EJ, Desmarais C, Klinger M, Carlson CS, Hansen JA, Rieder M, Robins HS. Emerson RO, et al. Among authors: dewitt ws. Nat Genet. 2017 May;49(5):659-665. doi: 10.1038/ng.3822. Epub 2017 Apr 3. Nat Genet. 2017. PMID: 28369038

5

Human T cell receptor occurrence patterns encode immune history, genetic background, and receptor specificity.

DeWitt WS 3rd, Smith A, Schoch G, Hansen JA, Matsen FA 4th, Bradley P. DeWitt WS 3rd, et al. Elife. 2018 Aug 28;7:e38358. doi: 10.7554/eLife.38358. Elife. 2018. PMID: 30152754 Free PMC article.

6

Deep generative models for T cell receptor protein sequences.

Davidsen K, Olson BJ, DeWitt WS 3rd, Feng J, Harkins E, Bradley P, Matsen FA 4th. Davidsen K, et al. Among authors: dewitt ws 3rd. Elife. 2019 Sep 5;8:e46935. doi: 10.7554/eLife.46935. Elife. 2019. PMID: 31487240 Free PMC article.

7

Dynamics of B cell repertoires and emergence of cross-reactive responses in patients with different severities of COVID-19.

Montague Z, Lv H, Otwinowski J, DeWitt WS, Isacchini G, Yip GK, Ng WW, Tsang OT, Yuan M, Liu H, Wilson IA, Peiris JSM, Wu NC, Nourmohammad A, Mok CKP. Montague Z, et al. Among authors: dewitt ws. Cell Rep. 2021 May 25;35(8):109173. doi: 10.1016/j.celrep.2021.109173. Epub 2021 May 9. Cell Rep. 2021. PMID: 33991510 Free PMC article.

8

Using Genotype Abundance to Improve Phylogenetic Inference.

DeWitt WS 3rd, Mesin L, Victora GD, Minin VN, Matsen FA 4th. DeWitt WS 3rd, et al. Mol Biol Evol. 2018 May 1;35(5):1253-1265. doi: 10.1093/molbev/msy020. Mol Biol Evol. 2018. PMID: 29474671 Free PMC article.

9

Inferring evolutionary dynamics of mutation rates through the lens of mutation spectrum variation.

Carlson J, DeWitt WS, Harris K. Carlson J, et al. Among authors: dewitt ws. Curr Opin Genet Dev. 2020 Jun;62:50-57. doi: 10.1016/j.gde.2020.05.024. Epub 2020 Jun 30. Curr Opin Genet Dev. 2020. PMID: 32619789 Free PMC article. Review.

10

ESTIMATION OF CELL LINEAGE TREES BY MAXIMUM-LIKELIHOOD PHYLOGENETICS.

Feng J, Dewitt WS 3rd, McKenna A, Simon N, Willis AD, Matsen FA 4th. Feng J, et al. Among authors: dewitt ws 3rd. Ann Appl Stat. 2021 Mar;15(1):343-362. doi: 10.1214/20-aoas1400. Epub 2021 Mar 18. Ann Appl Stat. 2021. PMID: 35990087 Free PMC article.

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