Magi A - Search Results

1

Using XCAVATOR and EXCAVATOR2 to Identify CNVs from WGS, WES, and TS Data.

D'Aurizio R, Semeraro R, Magi A. D'Aurizio R, et al. Among authors: magi a. Curr Protoc Hum Genet. 2018 Jul;98(1):e65. doi: 10.1002/cphg.65. Epub 2018 Jul 5. Curr Protoc Hum Genet. 2018. PMID: 29975818

2

EXCAVATOR: detecting copy number variants from whole-exome sequencing data.

Magi A, Tattini L, Cifola I, D'Aurizio R, Benelli M, Mangano E, Battaglia C, Bonora E, Kurg A, Seri M, Magini P, Giusti B, Romeo G, Pippucci T, De Bellis G, Abbate R, Gensini GF. Magi A, et al. Genome Biol. 2013;14(10):R120. doi: 10.1186/gb-2013-14-10-r120. Genome Biol. 2013. PMID: 24172663 Free PMC article.

3

Characterization and identification of hidden rare variants in the human genome.

Magi A, D'Aurizio R, Palombo F, Cifola I, Tattini L, Semeraro R, Pippucci T, Giusti B, Romeo G, Abbate R, Gensini GF. Magi A, et al. BMC Genomics. 2015 Apr 24;16(1):340. doi: 10.1186/s12864-015-1481-9. BMC Genomics. 2015. PMID: 25903059 Free PMC article.

4

Detection of Genomic Structural Variants from Next-Generation Sequencing Data.

Tattini L, D'Aurizio R, Magi A. Tattini L, et al. Among authors: magi a. Front Bioeng Biotechnol. 2015 Jun 25;3:92. doi: 10.3389/fbioe.2015.00092. eCollection 2015. Front Bioeng Biotechnol. 2015. PMID: 26161383 Free PMC article. Review.

5

Epilepsy with auditory features: A heterogeneous clinico-molecular disease.

Pippucci T, Licchetta L, Baldassari S, Palombo F, Menghi V, D'Aurizio R, Leta C, Stipa C, Boero G, d'Orsi G, Magi A, Scheffer I, Seri M, Tinuper P, Bisulli F. Pippucci T, et al. Among authors: magi a. Neurol Genet. 2015 May 14;1(1):e5. doi: 10.1212/NXG.0000000000000005. eCollection 2015 Jun. Neurol Genet. 2015. PMID: 27066544 Free PMC article.

6

Enhanced copy number variants detection from whole-exome sequencing data using EXCAVATOR2.

D'Aurizio R, Pippucci T, Tattini L, Giusti B, Pellegrini M, Magi A. D'Aurizio R, et al. Among authors: magi a. Nucleic Acids Res. 2016 Nov 16;44(20):e154. doi: 10.1093/nar/gkw695. Epub 2016 Aug 9. Nucleic Acids Res. 2016. PMID: 27507884 Free PMC article.

7

Nanopore sequencing data analysis: state of the art, applications and challenges.

Magi A, Semeraro R, Mingrino A, Giusti B, D'Aurizio R. Magi A, et al. Brief Bioinform. 2018 Nov 27;19(6):1256-1272. doi: 10.1093/bib/bbx062. Brief Bioinform. 2018. PMID: 28637243

8

Xome-Blender: A novel cancer genome simulator.

Semeraro R, Orlandini V, Magi A. Semeraro R, et al. Among authors: magi a. PLoS One. 2018 Apr 5;13(4):e0194472. doi: 10.1371/journal.pone.0194472. eCollection 2018. PLoS One. 2018. PMID: 29621252 Free PMC article.

9

Nano-GLADIATOR: real-time detection of copy number alterations from nanopore sequencing data.

Magi A, Bolognini D, Bartalucci N, Mingrino A, Semeraro R, Giovannini L, Bonifacio S, Parrini D, Pelo E, Mannelli F, Guglielmelli P, Maria Vannucchi A. Magi A, et al. Bioinformatics. 2019 Nov 1;35(21):4213-4221. doi: 10.1093/bioinformatics/btz241. Bioinformatics. 2019. PMID: 30949684

10

RNA sequencing reveals PNN and KCNQ1OT1 as predictive biomarkers of clinical outcome in stage III colorectal cancer patients treated with adjuvant chemotherapy.

Mini E, Lapucci A, Perrone G, D'Aurizio R, Napoli C, Brugia M, Landini I, Tassi R, Picariello L, Simi L, Mancini I, Messerini L, Magi A, Pinzani P, Mazzei T, Tonelli F, Nobili S. Mini E, et al. Among authors: magi a. Int J Cancer. 2019 Nov 1;145(9):2580-2593. doi: 10.1002/ijc.32326. Epub 2019 Jun 3. Int J Cancer. 2019. PMID: 30973654

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