Frey JE - Search Results

1

Pushing the limits of de novo genome assembly for complex prokaryotic genomes harboring very long, near identical repeats.

Schmid M, Frei D, Patrignani A, Schlapbach R, Frey JE, Remus-Emsermann MNP, Ahrens CH. Schmid M, et al. Among authors: frey je. Nucleic Acids Res. 2018 Sep 28;46(17):8953-8965. doi: 10.1093/nar/gky726. Nucleic Acids Res. 2018. PMID: 30137508 Free PMC article.

2

Complete genome sequence of Pseudomonas citronellolis P3B5, a candidate for microbial phyllo-remediation of hydrocarbon-contaminated sites.

Remus-Emsermann MNP, Schmid M, Gekenidis MT, Pelludat C, Frey JE, Ahrens CH, Drissner D. Remus-Emsermann MNP, et al. Among authors: frey je. Stand Genomic Sci. 2016 Sep 26;11:75. doi: 10.1186/s40793-016-0190-6. eCollection 2016. Stand Genomic Sci. 2016. PMID: 28300228 Free PMC article.

3

Seasonal Dynamics of Glyphosate and AMPA in Lake Greifensee: Rapid Microbial Degradation in the Epilimnion During Summer.

Huntscha S, Stravs MA, Bühlmann A, Ahrens CH, Frey JE, Pomati F, Hollender J, Buerge IJ, Balmer ME, Poiger T. Huntscha S, et al. Among authors: frey je. Environ Sci Technol. 2018 Apr 17;52(8):4641-4649. doi: 10.1021/acs.est.8b00314. Epub 2018 Mar 27. Environ Sci Technol. 2018. PMID: 29584408

4

Long-read based de novo assembly of low-complexity metagenome samples results in finished genomes and reveals insights into strain diversity and an active phage system.

Somerville V, Lutz S, Schmid M, Frei D, Moser A, Irmler S, Frey JE, Ahrens CH. Somerville V, et al. Among authors: frey je. BMC Microbiol. 2019 Jun 25;19(1):143. doi: 10.1186/s12866-019-1500-0. BMC Microbiol. 2019. PMID: 31238873 Free PMC article.

5

Ultralong Oxford Nanopore Reads Enable the Development of a Reference-Grade Perennial Ryegrass Genome Assembly.

Frei D, Veekman E, Grogg D, Stoffel-Studer I, Morishima A, Shimizu-Inatsugi R, Yates S, Shimizu KK, Frey JE, Studer B, Copetti D. Frei D, et al. Among authors: frey je. Genome Biol Evol. 2021 Aug 3;13(8):evab159. doi: 10.1093/gbe/evab159. Genome Biol Evol. 2021. PMID: 34247248 Free PMC article.

6

Genome sequence data of the antagonistic soil-borne yeast Cyberlindnera sargentensis (SHA 17.2).

Rueda-Mejia MP, Nägeli L, Lutz S, Ortiz-Merino RA, Frei D, Frey JE, Wolfe KH, Ahrens CH, Freimoser FM. Rueda-Mejia MP, et al. Among authors: frey je. Data Brief. 2022 Jan 5;40:107799. doi: 10.1016/j.dib.2022.107799. eCollection 2022 Feb. Data Brief. 2022. PMID: 35071701 Free PMC article.

7

Low-Input High-Molecular-Weight DNA Extraction for Long-Read Sequencing From Plants of Diverse Families.

Russo A, Mayjonade B, Frei D, Potente G, Kellenberger RT, Frachon L, Copetti D, Studer B, Frey JE, Grossniklaus U, Schlüter PM. Russo A, et al. Among authors: frey je. Front Plant Sci. 2022 May 19;13:883897. doi: 10.3389/fpls.2022.883897. eCollection 2022. Front Plant Sci. 2022. PMID: 35665166 Free PMC article.

8

Next generation biosecurity: Towards genome based identification to prevent spread of agronomic pests and pathogens using nanopore sequencing.

Frey JE, Frey B, Frei D, Blaser S, Gueuning M, Bühlmann A. Frey JE, et al. PLoS One. 2022 Jul 25;17(7):e0270897. doi: 10.1371/journal.pone.0270897. eCollection 2022. PLoS One. 2022. PMID: 35877652 Free PMC article.

9

Genome sequence data of the strongly antagonistic yeast Pichia kluyveri isolate APC 11.10 B as a foundation for analysing biocontrol mechanisms.

Nägeli L, Schuler M, Segessemann T, Frei D, Frey JE, Wolfe KH, Ahrens CH, Freimoser FM. Nägeli L, et al. Among authors: frey je. Data Brief. 2023 Jul 9;49:109394. doi: 10.1016/j.dib.2023.109394. eCollection 2023 Aug. Data Brief. 2023. PMID: 37496519 Free PMC article.

10

Genome of the early spider-orchid Ophrys sphegodes provides insights into sexual deception and pollinator adaptation.

Russo A, Alessandrini M, El Baidouri M, Frei D, Galise TR, Gaidusch L, Oertel HF, Garcia Morales SE, Potente G, Tian Q, Smetanin D, Bertrand JAM, Onstein RE, Panaud O, Frey JE, Cozzolino S, Wicker T, Xu S, Grossniklaus U, Schlüter PM. Russo A, et al. Among authors: frey je. Nat Commun. 2024 Jul 26;15(1):6308. doi: 10.1038/s41467-024-50622-4. Nat Commun. 2024. PMID: 39060266 Free PMC article.

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