Fu I - Search Results

1

Corrigendum: 5-Formylcytosine mediated DNA-protein cross-links block DNA replication and induce mutations in human cells.

Ji S, Fu I, Naldiga S, Shao H, Basu AK, Broyde S, Tretyakova NY. Ji S, et al. Among authors: fu i. Nucleic Acids Res. 2018 Oct 12;46(18):9892. doi: 10.1093/nar/gky809. Nucleic Acids Res. 2018. PMID: 30184121 Free PMC article. No abstract available.

2

Entrapment of a Histone Tail by a DNA Lesion in a Nucleosome Suggests the Lesion Impacts Epigenetic Marking: A Molecular Dynamics Study.

Fu I, Cai Y, Zhang Y, Geacintov NE, Broyde S. Fu I, et al. Biochemistry. 2016 Jan 19;55(2):239-42. doi: 10.1021/acs.biochem.5b01166. Epub 2016 Jan 6. Biochemistry. 2016. PMID: 26709619 Free PMC article.

3

Bypass of DNA-Protein Cross-links Conjugated to the 7-Deazaguanine Position of DNA by Translesion Synthesis Polymerases.

Wickramaratne S, Ji S, Mukherjee S, Su Y, Pence MG, Lior-Hoffmann L, Fu I, Broyde S, Guengerich FP, Distefano M, Schärer OD, Sham YY, Tretyakova N. Wickramaratne S, et al. Among authors: fu i. J Biol Chem. 2016 Nov 4;291(45):23589-23603. doi: 10.1074/jbc.M116.745257. Epub 2016 Sep 12. J Biol Chem. 2016. PMID: 27621316 Free PMC article.

4

Nucleosome Histone Tail Conformation and Dynamics: Impacts of Lysine Acetylation and a Nearby Minor Groove Benzo[a]pyrene-Derived Lesion.

Fu I, Cai Y, Geacintov NE, Zhang Y, Broyde S. Fu I, et al. Biochemistry. 2017 Apr 11;56(14):1963-1973. doi: 10.1021/acs.biochem.6b01208. Epub 2017 Mar 22. Biochemistry. 2017. PMID: 28304160 Free PMC article.

5

Synergistic effects of H3 and H4 nucleosome tails on structure and dynamics of a lesion-containing DNA: Binding of a displaced lesion partner base to the H3 tail for GG-NER recognition.

Cai Y, Fu I, Geacintov NE, Zhang Y, Broyde S. Cai Y, et al. Among authors: fu i. DNA Repair (Amst). 2018 May;65:73-78. doi: 10.1016/j.dnarep.2018.02.009. Epub 2018 Mar 8. DNA Repair (Amst). 2018. PMID: 29631253 Free PMC article.

6

5-Formylcytosine mediated DNA-protein cross-links block DNA replication and induce mutations in human cells.

Ji S, Fu I, Naldiga S, Shao H, Basu AK, Broyde S, Tretyakova NY. Ji S, et al. Among authors: fu i. Nucleic Acids Res. 2018 Jul 27;46(13):6455-6469. doi: 10.1093/nar/gky444. Nucleic Acids Res. 2018. PMID: 29905846 Free PMC article.

7

Rotational and translational positions determine the structural and dynamic impact of a single ribonucleotide incorporated in the nucleosome.

Fu I, Smith DJ, Broyde S. Fu I, et al. DNA Repair (Amst). 2019 Jan;73:155-163. doi: 10.1016/j.dnarep.2018.11.012. Epub 2018 Nov 29. DNA Repair (Amst). 2019. PMID: 30522887 Free PMC article.

8

Transcriptional Bypass of DNA-Protein and DNA-Peptide Conjugates by T7 RNA Polymerase.

Ji S, Thomforde J, Rogers C, Fu I, Broyde S, Tretyakova NY. Ji S, et al. Among authors: fu i. ACS Chem Biol. 2019 Dec 20;14(12):2564-2575. doi: 10.1021/acschembio.9b00365. Epub 2019 Oct 21. ACS Chem Biol. 2019. PMID: 31573793 Free PMC article.

9

5-Formylcytosine-induced DNA-peptide cross-links reduce transcription efficiency, but do not cause transcription errors in human cells.

Ji S, Park D, Kropachev K, Kolbanovskiy M, Fu I, Broyde S, Essawy M, Geacintov NE, Tretyakova NY. Ji S, et al. Among authors: fu i. J Biol Chem. 2019 Nov 29;294(48):18387-18397. doi: 10.1074/jbc.RA119.009834. Epub 2019 Oct 9. J Biol Chem. 2019. PMID: 31597704 Free PMC article.

10

Translesion Synthesis Past 5-Formylcytosine-Mediated DNA-Peptide Cross-Links by hPolη Is Dependent on the Local DNA Sequence.

Thomforde J, Fu I, Rodriguez F, Pujari SS, Broyde S, Tretyakova N. Thomforde J, et al. Among authors: fu i. Biochemistry. 2021 Jun 15;60(23):1797-1807. doi: 10.1021/acs.biochem.1c00130. Epub 2021 Jun 3. Biochemistry. 2021. PMID: 34080848 Free PMC article.

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