Farmer A - Search Results

1

High-throughput chromatin accessibility profiling at single-cell resolution.

Mezger A, Klemm S, Mann I, Brower K, Mir A, Bostick M, Farmer A, Fordyce P, Linnarsson S, Greenleaf W. Mezger A, et al. Among authors: farmer a. Nat Commun. 2018 Sep 7;9(1):3647. doi: 10.1038/s41467-018-05887-x. Nat Commun. 2018. PMID: 30194434 Free PMC article.

2

Transcriptome Analysis at the Single-Cell Level Using SMART Technology.

Fish RN, Bostick M, Lehman A, Farmer A. Fish RN, et al. Among authors: farmer a. Curr Protoc Mol Biol. 2016 Oct 10;116:4.26.1-4.26.24. doi: 10.1002/cpmb.23. Curr Protoc Mol Biol. 2016. PMID: 27723086

3

Strand-Specific Transcriptome Sequencing Using SMART Technology.

Bostick M, Bolduc N, Lehman A, Farmer A. Bostick M, et al. Among authors: farmer a. Curr Protoc Mol Biol. 2016 Oct 10;116:4.27.1-4.27.18. doi: 10.1002/cpmb.22. Curr Protoc Mol Biol. 2016. PMID: 27723087

4

A multicenter study benchmarking single-cell RNA sequencing technologies using reference samples.

Chen W, Zhao Y, Chen X, Yang Z, Xu X, Bi Y, Chen V, Li J, Choi H, Ernest B, Tran B, Mehta M, Kumar P, Farmer A, Mir A, Mehra UA, Li JL, Moos M Jr, Xiao W, Wang C. Chen W, et al. Among authors: farmer a. Nat Biotechnol. 2021 Sep;39(9):1103-1114. doi: 10.1038/s41587-020-00748-9. Epub 2020 Dec 21. Nat Biotechnol. 2021. PMID: 33349700 Free PMC article.

5

Biological controls for standardization and interpretation of adaptive immune receptor repertoire profiling.

Trück J, Eugster A, Barennes P, Tipton CM, Luning Prak ET, Bagnara D, Soto C, Sherkow JS, Payne AS, Lefranc MP, Farmer A; AIRR Community; Bostick M, Mariotti-Ferrandiz E. Trück J, et al. Among authors: farmer a. Elife. 2021 May 26;10:e66274. doi: 10.7554/eLife.66274. Elife. 2021. PMID: 34037521 Free PMC article. Review.

6

Bulk Sequencing from mRNA with UMI for Evaluation of B-Cell Isotype and Clonal Evolution: A Method by the AIRR Community.

Gupta N, Marquez S, Soto C, Chen EC, Bostick ML, Stervbo U, Farmer A. Gupta N, et al. Among authors: farmer a. Methods Mol Biol. 2022;2453:345-377. doi: 10.1007/978-1-0716-2115-8_19. Methods Mol Biol. 2022. PMID: 35622335 Free PMC article.

7

Assay-agnostic spatial profiling detects tumor microenvironment signatures: new diagnostic insights for triple-negative breast cancer.

Ziegler C, Mir A, Anandakrishnan S, Martin P, Contreras E, Slemons I, Witkowski B, DeSilva C, Farmer A, Vranic S, Gatalica Z, Richardson D, Derkach DN. Ziegler C, et al. Among authors: farmer a. Mol Oncol. 2023 Oct;17(10):1953-1961. doi: 10.1002/1878-0261.13515. Epub 2023 Sep 11. Mol Oncol. 2023. PMID: 37666492 Free PMC article.

8

Preparation of Low-Input and Ligation-Free ChIP-seq Libraries Using Template-Switching Technology.

Bolduc N, Lehman AP, Farmer A. Bolduc N, et al. Among authors: farmer a. Curr Protoc Mol Biol. 2016 Oct 10;116:7.28.1-7.28.26. doi: 10.1002/cpmb.24. Curr Protoc Mol Biol. 2016. PMID: 27723085

9

A multi-center cross-platform single-cell RNA sequencing reference dataset.

Chen X, Yang Z, Chen W, Zhao Y, Farmer A, Tran B, Furtak V, Moos M Jr, Xiao W, Wang C. Chen X, et al. Among authors: farmer a. Sci Data. 2021 Feb 2;8(1):39. doi: 10.1038/s41597-021-00809-x. Sci Data. 2021. PMID: 33531477 Free PMC article.

10

Benchmarking Single-Cell mRNA-Sequencing Technologies Uncovers Differences in Sensitivity and Reproducibility in Cell Types With Low RNA Content.

Holcomb I, Bansal N, Duong T, Babb P, Laliberte J, Swaminathan K, Xu HH, Melloy LA, Hildebrand J, Farmer A. Holcomb I, et al. Among authors: farmer a. J Biomol Tech. 2021 Dec 15;32(4):3fc1f5fe.dbeabb2a. doi: 10.7171/3fc1f5fe.dbeabb2a. J Biomol Tech. 2021. PMID: 35837268 Free PMC article.

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