Spencer SJ - Search Results

1

Dynamics of microbial populations mediating biogeochemical cycling in a freshwater lake.

Arora-Williams K, Olesen SW, Scandella BP, Delwiche K, Spencer SJ, Myers EM, Abraham S, Sooklal A, Preheim SP. Arora-Williams K, et al. Among authors: spencer sj. Microbiome. 2018 Sep 18;6(1):165. doi: 10.1186/s40168-018-0556-7. Microbiome. 2018. PMID: 30227897 Free PMC article.

2

Surveys, simulation and single-cell assays relate function and phylogeny in a lake ecosystem.

Preheim SP, Olesen SW, Spencer SJ, Materna A, Varadharajan C, Blackburn M, Friedman J, Rodríguez J, Hemond H, Alm EJ. Preheim SP, et al. Among authors: spencer sj. Nat Microbiol. 2016 Aug 15;1(9):16130. doi: 10.1038/nmicrobiol.2016.130. Nat Microbiol. 2016. PMID: 27562262 Free article.

3

Massively parallel sequencing of single cells by epicPCR links functional genes with phylogenetic markers.

Spencer SJ, Tamminen MV, Preheim SP, Guo MT, Briggs AW, Brito IL, A Weitz D, Pitkänen LK, Vigneault F, Juhani Virta MP, Alm EJ. Spencer SJ, et al. ISME J. 2016 Feb;10(2):427-36. doi: 10.1038/ismej.2015.124. Epub 2015 Sep 22. ISME J. 2016. PMID: 26394010 Free PMC article.

4

Small and mighty: adaptation of superphylum Patescibacteria to groundwater environment drives their genome simplicity.

Tian R, Ning D, He Z, Zhang P, Spencer SJ, Gao S, Shi W, Wu L, Zhang Y, Yang Y, Adams BG, Rocha AM, Detienne BL, Lowe KA, Joyner DC, Klingeman DM, Arkin AP, Fields MW, Hazen TC, Stahl DA, Alm EJ, Zhou J. Tian R, et al. Among authors: spencer sj. Microbiome. 2020 Apr 6;8(1):51. doi: 10.1186/s40168-020-00825-w. Microbiome. 2020. PMID: 32252814 Free PMC article.

5

Sustained Ability of a Natural Microbial Community to Remove Nitrate from Groundwater.

Paradis CJ, Miller JI, Moon JW, Spencer SJ, Lui LM, Van Nostrand JD, Ning D, Steen AD, McKay LD, Arkin AP, Zhou J, Alm EJ, Hazen TC. Paradis CJ, et al. Among authors: spencer sj. Ground Water. 2022 Jan;60(1):99-111. doi: 10.1111/gwat.13132. Epub 2021 Sep 22. Ground Water. 2022. PMID: 34490626 Free PMC article.

6

Ecogenomics of Groundwater Phages Suggests Niche Differentiation Linked to Specific Environmental Tolerance.

Kothari A, Roux S, Zhang H, Prieto A, Soneja D, Chandonia JM, Spencer S, Wu X, Altenburg S, Fields MW, Deutschbauer AM, Arkin AP, Alm EJ, Chakraborty R, Mukhopadhyay A. Kothari A, et al. mSystems. 2021 Jun 29;6(3):e0053721. doi: 10.1128/mSystems.00537-21. Online ahead of print. mSystems. 2021. PMID: 34184913 Free PMC article.

7

SAMNet: a network-based approach to integrate multi-dimensional high throughput datasets.

Gosline SJ, Spencer SJ, Ursu O, Fraenkel E. Gosline SJ, et al. Among authors: spencer sj. Integr Biol (Camb). 2012 Nov;4(11):1415-27. doi: 10.1039/c2ib20072d. Integr Biol (Camb). 2012. PMID: 23060147 Free PMC article.

8

Culturing of "Unculturable" Subsurface Microbes: Natural Organic Carbon Source Fuels the Growth of Diverse and Distinct Bacteria From Groundwater.

Wu X, Spencer S, Gushgari-Doyle S, Yee MO, Voriskova J, Li Y, Alm EJ, Chakraborty R. Wu X, et al. Front Microbiol. 2020 Dec 17;11:610001. doi: 10.3389/fmicb.2020.610001. eCollection 2020. Front Microbiol. 2020. PMID: 33391234 Free PMC article.

9

Defining the gut microbiota in individuals with periodontal diseases: an exploratory study.

Lourenςo TGB, Spencer SJ, Alm EJ, Colombo APV. Lourenςo TGB, et al. Among authors: spencer sj. J Oral Microbiol. 2018 Jul 3;10(1):1487741. doi: 10.1080/20002297.2018.1487741. eCollection 2018. J Oral Microbiol. 2018. PMID: 29988721 Free PMC article.

10

Evaluation of Homology-Independent CRISPR-Cas9 Off-Target Assessment Methods.

Chaudhari HG, Penterman J, Whitton HJ, Spencer SJ, Flanagan N, Lei Zhang MC, Huang E, Khedkar AS, Toomey JM, Shearer CA, Needham AW, Ho TW, Kulman JD, Cradick TJ, Kernytsky A. Chaudhari HG, et al. Among authors: spencer sj. CRISPR J. 2020 Dec;3(6):440-453. doi: 10.1089/crispr.2020.0053. CRISPR J. 2020. PMID: 33346710 Free PMC article.

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