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PhyloNetworks: A Package for Phylogenetic Networks.
Solís-Lemus C, Bastide P, Ané C. Solís-Lemus C, et al. Among authors: bastide p. Mol Biol Evol. 2017 Dec 1;34(12):3292-3298. doi: 10.1093/molbev/msx235. Mol Biol Evol. 2017. PMID: 28961984
Epidemiological hypothesis testing using a phylogeographic and phylodynamic framework.
Dellicour S, Lequime S, Vrancken B, Gill MS, Bastide P, Gangavarapu K, Matteson NL, Tan Y, du Plessis L, Fisher AA, Nelson MI, Gilbert M, Suchard MA, Andersen KG, Grubaugh ND, Pybus OG, Lemey P. Dellicour S, et al. Among authors: bastide p. Nat Commun. 2020 Nov 6;11(1):5620. doi: 10.1038/s41467-020-19122-z. Nat Commun. 2020. PMID: 33159066 Free PMC article.
Modeling the velocity of evolving lineages and predicting dispersal patterns.
Bastide P, Rocu P, Wirtz J, Hassler GW, Chevenet F, Fargette D, Suchard MA, Dellicour S, Lemey P, Guindon S. Bastide P, et al. Proc Natl Acad Sci U S A. 2024 Nov 19;121(47):e2411582121. doi: 10.1073/pnas.2411582121. Epub 2024 Nov 15. Proc Natl Acad Sci U S A. 2024. PMID: 39546571
231 results