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DNA G-quadruplex structures mold the DNA methylome.
Mao SQ, Ghanbarian AT, Spiegel J, Martínez Cuesta S, Beraldi D, Di Antonio M, Marsico G, Hänsel-Hertsch R, Tannahill D, Balasubramanian S. Mao SQ, et al. Among authors: beraldi d. Nat Struct Mol Biol. 2018 Oct;25(10):951-957. doi: 10.1038/s41594-018-0131-8. Epub 2018 Oct 1. Nat Struct Mol Biol. 2018. PMID: 30275516 Free PMC article.
5-Formylcytosine alters the structure of the DNA double helix.
Raiber EA, Murat P, Chirgadze DY, Beraldi D, Luisi BF, Balasubramanian S. Raiber EA, et al. Among authors: beraldi d. Nat Struct Mol Biol. 2015 Jan;22(1):44-49. doi: 10.1038/nsmb.2936. Epub 2014 Dec 15. Nat Struct Mol Biol. 2015. PMID: 25504322 Free PMC article.
G-quadruplex structures mark human regulatory chromatin.
Hänsel-Hertsch R, Beraldi D, Lensing SV, Marsico G, Zyner K, Parry A, Di Antonio M, Pike J, Kimura H, Narita M, Tannahill D, Balasubramanian S. Hänsel-Hertsch R, et al. Among authors: beraldi d. Nat Genet. 2016 Oct;48(10):1267-72. doi: 10.1038/ng.3662. Epub 2016 Sep 12. Nat Genet. 2016. PMID: 27618450
FOXM1 binds directly to non-consensus sequences in the human genome.
Sanders DA, Gormally MV, Marsico G, Beraldi D, Tannahill D, Balasubramanian S. Sanders DA, et al. Among authors: beraldi d. Genome Biol. 2015 Jun 23;16(1):130. doi: 10.1186/s13059-015-0696-z. Genome Biol. 2015. PMID: 26100407 Free PMC article.
Sequencing 5-Hydroxymethyluracil at Single-Base Resolution.
Kawasaki F, Martínez Cuesta S, Beraldi D, Mahtey A, Hardisty RE, Carrington M, Balasubramanian S. Kawasaki F, et al. Among authors: beraldi d. Angew Chem Int Ed Engl. 2018 Jul 26;57(31):9694-9696. doi: 10.1002/anie.201804046. Epub 2018 Jul 4. Angew Chem Int Ed Engl. 2018. PMID: 29882366 Free PMC article.
Enhanced Methylation Analysis by Recovery of Unsequenceable Fragments.
McInroy GR, Beraldi D, Raiber EA, Modrzynska K, van Delft P, Billker O, Balasubramanian S. McInroy GR, et al. Among authors: beraldi d. PLoS One. 2016 Mar 31;11(3):e0152322. doi: 10.1371/journal.pone.0152322. eCollection 2016. PLoS One. 2016. PMID: 27031619 Free PMC article.
55 results