Liu Y - Search Results

1

ce-Subpathway: Identification of ceRNA-mediated subpathways via joint power of ceRNAs and pathway topologies.

Feng C, Song C, Ning Z, Ai B, Wang Q, Xu Y, Li M, Bai X, Zhao J, Liu Y, Li X, Zhang J, Li C. Feng C, et al. Among authors: liu y. J Cell Mol Med. 2019 Feb;23(2):967-984. doi: 10.1111/jcmm.13997. Epub 2018 Nov 12. J Cell Mol Med. 2019. PMID: 30421585 Free PMC article.

2

Identification and analysis of a key long non-coding RNAs (lncRNAs)-associated module reveal functional lncRNAs in cardiac hypertrophy.

Zhang J, Feng C, Song C, Ai B, Bai X, Liu Y, Li X, Zhao J, Shi S, Chen X, Su X, Li C. Zhang J, et al. Among authors: liu y. J Cell Mol Med. 2018 Feb;22(2):892-903. doi: 10.1111/jcmm.13376. Epub 2017 Nov 20. J Cell Mol Med. 2018. PMID: 29154475 Free PMC article.

3

HiFreSP: A novel high-frequency sub-pathway mining approach to identify robust prognostic gene signatures.

Li M, Zhao J, Li X, Chen Y, Feng C, Qian F, Liu Y, Zhang J, He J, Ai B, Ning Z, Liu W, Bai X, Han X, Wu Z, Xu X, Tang Z, Pan Q, Xu L, Li C, Wang Q, Li E. Li M, et al. Among authors: liu y, liu w. Brief Bioinform. 2020 Jul 15;21(4):1411-1424. doi: 10.1093/bib/bbz078. Brief Bioinform. 2020. PMID: 31350847

4

Topologically inferring active miRNA-mediated subpathways toward precise cancer classification by directed random walk.

Ning Z, Feng C, Song C, Liu W, Shang D, Li M, Wang Q, Zhao J, Liu Y, Chen J, Yu X, Zhang J, Li C. Ning Z, et al. Among authors: liu y, liu w. Mol Oncol. 2019 Oct;13(10):2211-2226. doi: 10.1002/1878-0261.12563. Epub 2019 Aug 27. Mol Oncol. 2019. PMID: 31408573 Free PMC article.

5

VARAdb: a comprehensive variation annotation database for human.

Pan Q, Liu YJ, Bai XF, Han XL, Jiang Y, Ai B, Shi SS, Wang F, Xu MC, Wang YZ, Zhao J, Chen JX, Zhang J, Li XC, Zhu J, Zhang GR, Wang QY, Li CQ. Pan Q, et al. Among authors: liu yj. Nucleic Acids Res. 2021 Jan 8;49(D1):D1431-D1444. doi: 10.1093/nar/gkaa922. Nucleic Acids Res. 2021. PMID: 33095866 Free PMC article.

6

Characterizing and optimizing human anticancer drug targets based on topological properties in the context of biological pathways.

Zhang J, Wang Y, Shang D, Yu F, Liu W, Zhang Y, Feng C, Wang Q, Xu Y, Liu Y, Bai X, Li X, Li C. Zhang J, et al. Among authors: liu y, liu w. J Biomed Inform. 2015 Apr;54:132-40. doi: 10.1016/j.jbi.2015.02.007. Epub 2015 Feb 24. J Biomed Inform. 2015. PMID: 25724580 Free article.

7

Integration of pathway structure information into a reweighted partial Cox regression approach for survival analysis on high-dimensional gene expression data.

Liu W, Wang Q, Zhao J, Zhang C, Liu Y, Zhang J, Bai X, Li X, Feng H, Liao M, Wang W, Li C. Liu W, et al. Among authors: liu y. Mol Biosyst. 2015 Jul;11(7):1876-86. doi: 10.1039/c5mb00044k. Mol Biosyst. 2015. PMID: 25891149

8

Topologically inferring pathway activity toward precise cancer classification via integrating genomic and metabolomic data: prostate cancer as a case.

Liu W, Bai X, Liu Y, Wang W, Han J, Wang Q, Xu Y, Zhang C, Zhang S, Li X, Ren Z, Zhang J, Li C. Liu W, et al. Among authors: liu y. Sci Rep. 2015 Aug 19;5:13192. doi: 10.1038/srep13192. Sci Rep. 2015. PMID: 26286638 Free PMC article.

9

RWCFusion: identifying phenotype-specific cancer driver gene fusions based on fusion pair random walk scoring method.

Zhao J, Li X, Yao Q, Li M, Zhang J, Ai B, Liu W, Wang Q, Feng C, Liu Y, Bai X, Song C, Li S, Li E, Xu L, Li C. Zhao J, et al. Among authors: liu y, liu w. Oncotarget. 2016 Sep 20;7(38):61054-61068. doi: 10.18632/oncotarget.11064. Oncotarget. 2016. PMID: 27506935 Free PMC article.

10

KnockTF: a comprehensive human gene expression profile database with knockdown/knockout of transcription factors.

Feng C, Song C, Liu Y, Qian F, Gao Y, Ning Z, Wang Q, Jiang Y, Li Y, Li M, Chen J, Zhang J, Li C. Feng C, et al. Among authors: liu y. Nucleic Acids Res. 2020 Jan 8;48(D1):D93-D100. doi: 10.1093/nar/gkz881. Nucleic Acids Res. 2020. PMID: 31598675 Free PMC article.

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