Lyon D - Search Results

1

STRING v11: protein-protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets.

Szklarczyk D, Gable AL, Lyon D, Junge A, Wyder S, Huerta-Cepas J, Simonovic M, Doncheva NT, Morris JH, Bork P, Jensen LJ, Mering CV. Szklarczyk D, et al. Among authors: lyon d. Nucleic Acids Res. 2019 Jan 8;47(D1):D607-D613. doi: 10.1093/nar/gky1131. Nucleic Acids Res. 2019. PMID: 30476243 Free PMC article.

2

The STRING database in 2021: customizable protein-protein networks, and functional characterization of user-uploaded gene/measurement sets.

Szklarczyk D, Gable AL, Nastou KC, Lyon D, Kirsch R, Pyysalo S, Doncheva NT, Legeay M, Fang T, Bork P, Jensen LJ, von Mering C. Szklarczyk D, et al. Among authors: lyon d. Nucleic Acids Res. 2021 Jan 8;49(D1):D605-D612. doi: 10.1093/nar/gkaa1074. Nucleic Acids Res. 2021. PMID: 33237311 Free PMC article.

3

Correction to 'The STRING database in 2021: customizable protein-protein networks, and functional characterization of user-uploaded gene/measurement sets'.

Szklarczyk D, Gable AL, Nastou KC, Lyon D, Kirsch R, Pyysalo S, Doncheva NT, Legeay M, Fang T, Bork P, Jensen LJ, von Mering C. Szklarczyk D, et al. Among authors: lyon d. Nucleic Acids Res. 2021 Oct 11;49(18):10800. doi: 10.1093/nar/gkab835. Nucleic Acids Res. 2021. PMID: 34530444 Free PMC article. No abstract available.

4

Systematic assessment of pathway databases, based on a diverse collection of user-submitted experiments.

Gable AL, Szklarczyk D, Lyon D, Matias Rodrigues JF, von Mering C. Gable AL, et al. Among authors: lyon d. Brief Bioinform. 2022 Sep 20;23(5):bbac355. doi: 10.1093/bib/bbac355. Brief Bioinform. 2022. PMID: 36088548 Free PMC article.

5

Specifying RNA-Binding Regions in Proteins by Peptide Cross-Linking and Affinity Purification.

Mullari M, Lyon D, Jensen LJ, Nielsen ML. Mullari M, et al. Among authors: lyon d. J Proteome Res. 2017 Aug 4;16(8):2762-2772. doi: 10.1021/acs.jproteome.7b00042. Epub 2017 Jul 7. J Proteome Res. 2017. PMID: 28648085

6

Avoiding abundance bias in the functional annotation of post-translationally modified proteins.

Schölz C, Lyon D, Refsgaard JC, Jensen LJ, Choudhary C, Weinert BT. Schölz C, et al. Among authors: lyon d. Nat Methods. 2015 Nov;12(11):1003-4. doi: 10.1038/nmeth.3621. Nat Methods. 2015. PMID: 26513550 No abstract available.

7

Systems-wide Analysis of Serine ADP-Ribosylation Reveals Widespread Occurrence and Site-Specific Overlap with Phosphorylation.

Larsen SC, Hendriks IA, Lyon D, Jensen LJ, Nielsen ML. Larsen SC, et al. Among authors: lyon d. Cell Rep. 2018 Aug 28;24(9):2493-2505.e4. doi: 10.1016/j.celrep.2018.07.083. Cell Rep. 2018. PMID: 30157440 Free article.

8

Site-specific mapping of the human SUMO proteome reveals co-modification with phosphorylation.

Hendriks IA, Lyon D, Young C, Jensen LJ, Vertegaal AC, Nielsen ML. Hendriks IA, et al. Among authors: lyon d. Nat Struct Mol Biol. 2017 Mar;24(3):325-336. doi: 10.1038/nsmb.3366. Epub 2017 Jan 23. Nat Struct Mol Biol. 2017. PMID: 28112733

9

Site-specific characterization of endogenous SUMOylation across species and organs.

Hendriks IA, Lyon D, Su D, Skotte NH, Daniel JA, Jensen LJ, Nielsen ML. Hendriks IA, et al. Among authors: lyon d. Nat Commun. 2018 Jun 25;9(1):2456. doi: 10.1038/s41467-018-04957-4. Nat Commun. 2018. PMID: 29942033 Free PMC article.

10

Proteome-wide analysis of arginine monomethylation reveals widespread occurrence in human cells.

Larsen SC, Sylvestersen KB, Mund A, Lyon D, Mullari M, Madsen MV, Daniel JA, Jensen LJ, Nielsen ML. Larsen SC, et al. Among authors: lyon d. Sci Signal. 2016 Aug 30;9(443):rs9. doi: 10.1126/scisignal.aaf7329. Sci Signal. 2016. PMID: 27577262

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