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Page 1
MycoCosm portal: gearing up for 1000 fungal genomes.
Grigoriev IV, Nikitin R, Haridas S, Kuo A, Ohm R, Otillar R, Riley R, Salamov A, Zhao X, Korzeniewski F, Smirnova T, Nordberg H, Dubchak I, Shabalov I. Grigoriev IV, et al. Among authors: riley r. Nucleic Acids Res. 2014 Jan;42(Database issue):D699-704. doi: 10.1093/nar/gkt1183. Epub 2013 Dec 1. Nucleic Acids Res. 2014. PMID: 24297253 Free PMC article.
Genomics of wood-degrading fungi.
Ohm RA, Riley R, Salamov A, Min B, Choi IG, Grigoriev IV. Ohm RA, et al. Among authors: riley r. Fungal Genet Biol. 2014 Nov;72:82-90. doi: 10.1016/j.fgb.2014.05.001. Epub 2014 May 20. Fungal Genet Biol. 2014. PMID: 24853079
Comparative genomics of biotechnologically important yeasts.
Riley R, Haridas S, Wolfe KH, Lopes MR, Hittinger CT, Göker M, Salamov AA, Wisecaver JH, Long TM, Calvey CH, Aerts AL, Barry KW, Choi C, Clum A, Coughlan AY, Deshpande S, Douglass AP, Hanson SJ, Klenk HP, LaButti KM, Lapidus A, Lindquist EA, Lipzen AM, Meier-Kolthoff JP, Ohm RA, Otillar RP, Pangilinan JL, Peng Y, Rokas A, Rosa CA, Scheuner C, Sibirny AA, Slot JC, Stielow JB, Sun H, Kurtzman CP, Blackwell M, Grigoriev IV, Jeffries TW. Riley R, et al. Proc Natl Acad Sci U S A. 2016 Aug 30;113(35):9882-7. doi: 10.1073/pnas.1603941113. Epub 2016 Aug 17. Proc Natl Acad Sci U S A. 2016. PMID: 27535936 Free PMC article.
Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus.
de Vries RP, Riley R, Wiebenga A, Aguilar-Osorio G, Amillis S, Uchima CA, Anderluh G, Asadollahi M, Askin M, Barry K, Battaglia E, Bayram Ö, Benocci T, Braus-Stromeyer SA, Caldana C, Cánovas D, Cerqueira GC, Chen F, Chen W, Choi C, Clum A, Dos Santos RA, Damásio AR, Diallinas G, Emri T, Fekete E, Flipphi M, Freyberg S, Gallo A, Gournas C, Habgood R, Hainaut M, Harispe ML, Henrissat B, Hildén KS, Hope R, Hossain A, Karabika E, Karaffa L, Karányi Z, Kraševec N, Kuo A, Kusch H, LaButti K, Lagendijk EL, Lapidus A, Levasseur A, Lindquist E, Lipzen A, Logrieco AF, MacCabe A, Mäkelä MR, Malavazi I, Melin P, Meyer V, Mielnichuk N, Miskei M, Molnár ÁP, Mulé G, Ngan CY, Orejas M, Orosz E, Ouedraogo JP, Overkamp KM, Park HS, Perrone G, Piumi F, Punt PJ, Ram AF, Ramón A, Rauscher S, Record E, Riaño-Pachón DM, Robert V, Röhrig J, Ruller R, Salamov A, Salih NS, Samson RA, Sándor E, Sanguinetti M, Schütze T, Sepčić K, Shelest E, Sherlock G, Sophianopoulou V, Squina FM, Sun H, Susca A, Todd RB, Tsang A, Unkles SE, van de Wiele N, van Rossen-Uffink D, Oliveira JV, Vesth TC, Visser J, Yu JH, Zhou M, Andersen MR, Archer DB, Baker SE, Benoit I, Brakhage AA, Braus GH, Fischer R, Frisvad JC, Gol… See abstract for full author list ➔ de Vries RP, et al. Among authors: riley r. Genome Biol. 2017 Feb 14;18(1):28. doi: 10.1186/s13059-017-1151-0. Genome Biol. 2017. PMID: 28196534 Free PMC article.
Investigation of inter- and intraspecies variation through genome sequencing of Aspergillus section Nigri.
Vesth TC, Nybo JL, Theobald S, Frisvad JC, Larsen TO, Nielsen KF, Hoof JB, Brandl J, Salamov A, Riley R, Gladden JM, Phatale P, Nielsen MT, Lyhne EK, Kogle ME, Strasser K, McDonnell E, Barry K, Clum A, Chen C, LaButti K, Haridas S, Nolan M, Sandor L, Kuo A, Lipzen A, Hainaut M, Drula E, Tsang A, Magnuson JK, Henrissat B, Wiebenga A, Simmons BA, Mäkelä MR, de Vries RP, Grigoriev IV, Mortensen UH, Baker SE, Andersen MR. Vesth TC, et al. Among authors: riley r. Nat Genet. 2018 Dec;50(12):1688-1695. doi: 10.1038/s41588-018-0246-1. Epub 2018 Oct 22. Nat Genet. 2018. PMID: 30349117
The gold-standard genome of Aspergillus niger NRRL 3 enables a detailed view of the diversity of sugar catabolism in fungi.
Aguilar-Pontes MV, Brandl J, McDonnell E, Strasser K, Nguyen TTM, Riley R, Mondo S, Salamov A, Nybo JL, Vesth TC, Grigoriev IV, Andersen MR, Tsang A, de Vries RP. Aguilar-Pontes MV, et al. Among authors: riley r. Stud Mycol. 2018 Sep;91:61-78. doi: 10.1016/j.simyco.2018.10.001. Epub 2018 Oct 7. Stud Mycol. 2018. PMID: 30425417 Free PMC article.
A comparative genomics study of 23 Aspergillus species from section Flavi.
Kjærbølling I, Vesth T, Frisvad JC, Nybo JL, Theobald S, Kildgaard S, Petersen TI, Kuo A, Sato A, Lyhne EK, Kogle ME, Wiebenga A, Kun RS, Lubbers RJM, Mäkelä MR, Barry K, Chovatia M, Clum A, Daum C, Haridas S, He G, LaButti K, Lipzen A, Mondo S, Pangilinan J, Riley R, Salamov A, Simmons BA, Magnuson JK, Henrissat B, Mortensen UH, Larsen TO, de Vries RP, Grigoriev IV, Machida M, Baker SE, Andersen MR. Kjærbølling I, et al. Among authors: riley r. Nat Commun. 2020 Feb 27;11(1):1106. doi: 10.1038/s41467-019-14051-y. Nat Commun. 2020. PMID: 32107379 Free PMC article.
Genomic Analysis of Aspergillus Section Terrei Reveals a High Potential in Secondary Metabolite Production and Plant Biomass Degradation.
Theobald S, Vesth TC, Geib E, Nybo JL, Frisvad JC, Larsen TO, Kuo A, LaButti K, Lyhne EK, Kjærbølling I, Ledsgaard L, Barry K, Clum A, Chen C, Nolan M, Sandor L, Lipzen A, Mondo S, Pangilinan J, Salamov A, Riley R, Wiebenga A, Müller A, Kun RS, Dos Santos Gomes AC, Henrissat B, Magnuson JK, Simmons BA, Mäkelä MR, Mortensen UH, Grigoriev IV, Brock M, Baker SE, de Vries RP, Andersen MR. Theobald S, et al. Among authors: riley r. J Fungi (Basel). 2024 Jul 22;10(7):507. doi: 10.3390/jof10070507. J Fungi (Basel). 2024. PMID: 39057392 Free PMC article.
1,607 results