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Page 1
Genomic insights into the 2016-2017 cholera epidemic in Yemen.
Weill FX, Domman D, Njamkepo E, Almesbahi AA, Naji M, Nasher SS, Rakesh A, Assiri AM, Sharma NC, Kariuki S, Pourshafie MR, Rauzier J, Abubakar A, Carter JY, Wamala JF, Seguin C, Bouchier C, Malliavin T, Bakhshi B, Abulmaali HHN, Kumar D, Njoroge SM, Malik MR, Kiiru J, Luquero FJ, Azman AS, Ramamurthy T, Thomson NR, Quilici ML. Weill FX, et al. Among authors: thomson nr. Nature. 2019 Jan;565(7738):230-233. doi: 10.1038/s41586-018-0818-3. Epub 2019 Jan 2. Nature. 2019. PMID: 30602788 Free PMC article.
Fitting the niche by genomic adaptation.
Thomson N, Bentley S, Holden M, Parkhill J. Thomson N, et al. Nat Rev Microbiol. 2003 Nov;1(2):92-3. doi: 10.1038/nrmicro756. Nat Rev Microbiol. 2003. PMID: 15035037
Epidemic multiple drug resistant Salmonella Typhimurium causing invasive disease in sub-Saharan Africa have a distinct genotype.
Kingsley RA, Msefula CL, Thomson NR, Kariuki S, Holt KE, Gordon MA, Harris D, Clarke L, Whitehead S, Sangal V, Marsh K, Achtman M, Molyneux ME, Cormican M, Parkhill J, MacLennan CA, Heyderman RS, Dougan G. Kingsley RA, et al. Among authors: thomson nr. Genome Res. 2009 Dec;19(12):2279-87. doi: 10.1101/gr.091017.109. Epub 2009 Nov 9. Genome Res. 2009. PMID: 19901036 Free PMC article.
Yersinia pestis genome sequencing identifies patterns of global phylogenetic diversity.
Morelli G, Song Y, Mazzoni CJ, Eppinger M, Roumagnac P, Wagner DM, Feldkamp M, Kusecek B, Vogler AJ, Li Y, Cui Y, Thomson NR, Jombart T, Leblois R, Lichtner P, Rahalison L, Petersen JM, Balloux F, Keim P, Wirth T, Ravel J, Yang R, Carniel E, Achtman M. Morelli G, et al. Among authors: thomson nr. Nat Genet. 2010 Dec;42(12):1140-3. doi: 10.1038/ng.705. Epub 2010 Oct 31. Nat Genet. 2010. PMID: 21037571 Free PMC article.
Evidence for several waves of global transmission in the seventh cholera pandemic.
Mutreja A, Kim DW, Thomson NR, Connor TR, Lee JH, Kariuki S, Croucher NJ, Choi SY, Harris SR, Lebens M, Niyogi SK, Kim EJ, Ramamurthy T, Chun J, Wood JL, Clemens JD, Czerkinsky C, Nair GB, Holmgren J, Parkhill J, Dougan G. Mutreja A, et al. Among authors: thomson nr. Nature. 2011 Aug 24;477(7365):462-5. doi: 10.1038/nature10392. Nature. 2011. PMID: 21866102 Free PMC article.
Shigella sonnei genome sequencing and phylogenetic analysis indicate recent global dissemination from Europe.
Holt KE, Baker S, Weill FX, Holmes EC, Kitchen A, Yu J, Sangal V, Brown DJ, Coia JE, Kim DW, Choi SY, Kim SH, da Silveira WD, Pickard DJ, Farrar JJ, Parkhill J, Dougan G, Thomson NR. Holt KE, et al. Among authors: thomson nr. Nat Genet. 2012 Sep;44(9):1056-9. doi: 10.1038/ng.2369. Epub 2012 Aug 5. Nat Genet. 2012. PMID: 22863732 Free PMC article.
Global phylogeny of Shigella sonnei strains from limited single nucleotide polymorphisms (SNPs) and development of a rapid and cost-effective SNP-typing scheme for strain identification by high-resolution melting analysis.
Sangal V, Holt KE, Yuan J, Brown DJ, Filliol-Toutain I, Weill FX, Kim DW, da Silveira WD, Pickard D, Thomson NR, Parkhill J, Yu J. Sangal V, et al. Among authors: thomson nr. J Clin Microbiol. 2013 Jan;51(1):303-5. doi: 10.1128/JCM.02238-12. Epub 2012 Oct 31. J Clin Microbiol. 2013. PMID: 23115259 Free PMC article.
The population structure of Vibrio cholerae from the Chandigarh Region of Northern India.
Abd El Ghany M, Chander J, Mutreja A, Rashid M, Hill-Cawthorne GA, Ali S, Naeem R, Thomson NR, Dougan G, Pain A. Abd El Ghany M, et al. Among authors: thomson nr. PLoS Negl Trop Dis. 2014 Jul 24;8(7):e2981. doi: 10.1371/journal.pntd.0002981. eCollection 2014 Jul. PLoS Negl Trop Dis. 2014. PMID: 25058483 Free PMC article.
Intercontinental dissemination of azithromycin-resistant shigellosis through sexual transmission: a cross-sectional study.
Baker KS, Dallman TJ, Ashton PM, Day M, Hughes G, Crook PD, Gilbart VL, Zittermann S, Allen VG, Howden BP, Tomita T, Valcanis M, Harris SR, Connor TR, Sintchenko V, Howard P, Brown JD, Petty NK, Gouali M, Thanh DP, Keddy KH, Smith AM, Talukder KA, Faruque SM, Parkhill J, Baker S, Weill FX, Jenkins C, Thomson NR. Baker KS, et al. Among authors: thomson nr. Lancet Infect Dis. 2015 Aug;15(8):913-21. doi: 10.1016/S1473-3099(15)00002-X. Epub 2015 Apr 27. Lancet Infect Dis. 2015. PMID: 25936611
345 results