Cook D - Search Results

1

plyranges: a grammar of genomic data transformation.

Lee S, Cook D, Lawrence M. Lee S, et al. Among authors: cook d. Genome Biol. 2019 Jan 4;20(1):4. doi: 10.1186/s13059-018-1597-8. Genome Biol. 2019. PMID: 30609939 Free PMC article.

2

ggbio: an R package for extending the grammar of graphics for genomic data.

Yin T, Cook D, Lawrence M. Yin T, et al. Among authors: cook d. Genome Biol. 2012 Aug 31;13(8):R77. doi: 10.1186/gb-2012-13-8-r77. Genome Biol. 2012. PMID: 22937822 Free PMC article.

3

NanoMethViz: An R/Bioconductor package for visualizing long-read methylation data.

Su S, Gouil Q, Blewitt ME, Cook D, Hickey PF, Ritchie ME. Su S, et al. Among authors: cook d. PLoS Comput Biol. 2021 Oct 25;17(10):e1009524. doi: 10.1371/journal.pcbi.1009524. eCollection 2021 Oct. PLoS Comput Biol. 2021. PMID: 34695109 Free PMC article.

4

bigPint: A Bioconductor visualization package that makes big data pint-sized.

Rutter L, Cook D. Rutter L, et al. Among authors: cook d. PLoS Comput Biol. 2020 Jun 15;16(6):e1007912. doi: 10.1371/journal.pcbi.1007912. eCollection 2020 Jun. PLoS Comput Biol. 2020. PMID: 32542031 Free PMC article.

5

Visualization methods for differential expression analysis.

Rutter L, Moran Lauter AN, Graham MA, Cook D. Rutter L, et al. Among authors: cook d. BMC Bioinformatics. 2019 Sep 6;20(1):458. doi: 10.1186/s12859-019-2968-1. BMC Bioinformatics. 2019. PMID: 31492109 Free PMC article.

6

Transcriptomic responses to diet quality and viral infection in Apis mellifera.

Rutter L, Carrillo-Tripp J, Bonning BC, Cook D, Toth AL, Dolezal AG. Rutter L, et al. Among authors: cook d. BMC Genomics. 2019 May 22;20(1):412. doi: 10.1186/s12864-019-5767-1. BMC Genomics. 2019. PMID: 31117959 Free PMC article.

7

ASAS-NANP SYMPOSIUM: prospects for interactive and dynamic graphics in the era of data-rich animal science1.

Morota G, Cheng H, Cook D, Tanaka E. Morota G, et al. Among authors: cook d. J Anim Sci. 2021 Feb 1;99(2):skaa402. doi: 10.1093/jas/skaa402. J Anim Sci. 2021. PMID: 33626150 Free PMC article.

8

Examining Short-Term Responses to a Long-Term Problem: RNA-Seq Analyses of Iron Deficiency Chlorosis Tolerant Soybean.

Moran Lauter AN, Rutter L, Cook D, O'Rourke JA, Graham MA. Moran Lauter AN, et al. Among authors: cook d. Int J Mol Sci. 2020 May 19;21(10):3591. doi: 10.3390/ijms21103591. Int J Mol Sci. 2020. PMID: 32438745 Free PMC article.

9

Designing the Australian Cancer Atlas: visualizing geostatistical model uncertainty for multiple audiences.

Goodwin S, Saunders T, Aitken J, Baade P, Chandrasiri U, Cook D, Cramb S, Duncan E, Kobakian S, Roberts J, Mengersen K. Goodwin S, et al. Among authors: cook d. J Am Med Inform Assoc. 2024 Nov 1;31(11):2447-2454. doi: 10.1093/jamia/ocae212. J Am Med Inform Assoc. 2024. PMID: 39135444 Free PMC article.

10

Analytical Techniques for Supporting Hospital Case Mix Planning Encompassing Forced Adjustments, Comparisons, and Scoring.

Burdett RL, Corry P, Cook D, Yarlagadda P. Burdett RL, et al. Among authors: cook d. Healthcare (Basel). 2024 Dec 30;13(1):47. doi: 10.3390/healthcare13010047. Healthcare (Basel). 2024. PMID: 39791657 Free PMC article.

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