Pluhackova K - Search Results

1

Structural Model of the mIgM B-Cell Receptor Transmembrane Domain From Self-Association Molecular Dynamics Simulations.

Friess MD, Pluhackova K, Böckmann RA. Friess MD, et al. Among authors: pluhackova k. Front Immunol. 2018 Dec 17;9:2947. doi: 10.3389/fimmu.2018.02947. eCollection 2018. Front Immunol. 2018. PMID: 30619307 Free PMC article.

2

Molecular dynamics simulations of membrane proteins.

Pluhackova K, Wassenaar TA, Böckmann RA. Pluhackova K, et al. Methods Mol Biol. 2013;1033:85-101. doi: 10.1007/978-1-62703-487-6_6. Methods Mol Biol. 2013. PMID: 23996172

3

Spontaneous adsorption of coiled-coil model peptides K and E to a mixed lipid bilayer.

Pluhackova K, Wassenaar TA, Kirsch S, Böckmann RA. Pluhackova K, et al. J Phys Chem B. 2015 Mar 26;119(12):4396-408. doi: 10.1021/acs.jpcb.5b00434. Epub 2015 Mar 12. J Phys Chem B. 2015. PMID: 25719673

4

Biomembranes in atomistic and coarse-grained simulations.

Pluhackova K, Böckmann RA. Pluhackova K, et al. J Phys Condens Matter. 2015 Aug 19;27(32):323103. doi: 10.1088/0953-8984/27/32/323103. Epub 2015 Jul 21. J Phys Condens Matter. 2015. PMID: 26194872 Review.

5

Synaptobrevin Transmembrane Domain Dimerization Studied by Multiscale Molecular Dynamics Simulations.

Han J, Pluhackova K, Wassenaar TA, Böckmann RA. Han J, et al. Among authors: pluhackova k. Biophys J. 2015 Aug 18;109(4):760-71. doi: 10.1016/j.bpj.2015.06.049. Biophys J. 2015. PMID: 26287628 Free PMC article.

6

Extension of the LOPLS-AA Force Field for Alcohols, Esters, and Monoolein Bilayers and its Validation by Neutron Scattering Experiments.

Pluhackova K, Morhenn H, Lautner L, Lohstroh W, Nemkovski KS, Unruh T, Böckmann RA. Pluhackova K, et al. J Phys Chem B. 2015 Dec 10;119(49):15287-99. doi: 10.1021/acs.jpcb.5b08569. Epub 2015 Nov 30. J Phys Chem B. 2015. PMID: 26537654

7

High-Throughput Simulations of Dimer and Trimer Assembly of Membrane Proteins. The DAFT Approach.

Wassenaar TA, Pluhackova K, Moussatova A, Sengupta D, Marrink SJ, Tieleman DP, Böckmann RA. Wassenaar TA, et al. Among authors: pluhackova k. J Chem Theory Comput. 2015 May 12;11(5):2278-91. doi: 10.1021/ct5010092. Epub 2015 Mar 26. J Chem Theory Comput. 2015. PMID: 26574426

8

Going Backward: A Flexible Geometric Approach to Reverse Transformation from Coarse Grained to Atomistic Models.

Wassenaar TA, Pluhackova K, Böckmann RA, Marrink SJ, Tieleman DP. Wassenaar TA, et al. Among authors: pluhackova k. J Chem Theory Comput. 2014 Feb 11;10(2):676-90. doi: 10.1021/ct400617g. Epub 2014 Jan 21. J Chem Theory Comput. 2014. PMID: 26580045

9

Optimization of the OPLS-AA Force Field for Long Hydrocarbons.

Siu SW, Pluhackova K, Böckmann RA. Siu SW, et al. Among authors: pluhackova k. J Chem Theory Comput. 2012 Apr 10;8(4):1459-70. doi: 10.1021/ct200908r. Epub 2012 Mar 30. J Chem Theory Comput. 2012. PMID: 26596756

10

Synaptobrevin transmembrane domain determines the structure and dynamics of the SNARE motif and the linker region.

Han J, Pluhackova K, Bruns D, Böckmann RA. Han J, et al. Among authors: pluhackova k. Biochim Biophys Acta. 2016 Apr;1858(4):855-65. doi: 10.1016/j.bbamem.2016.01.030. Epub 2016 Feb 4. Biochim Biophys Acta. 2016. PMID: 26851777 Free article.

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