Shepherd L - Search Results

1

HMP16SData: Efficient Access to the Human Microbiome Project Through Bioconductor.

Schiffer L, Azhar R, Shepherd L, Ramos M, Geistlinger L, Huttenhower C, Dowd JB, Segata N, Waldron L. Schiffer L, et al. Among authors: shepherd l. Am J Epidemiol. 2019 Jun 1;188(6):1023-1026. doi: 10.1093/aje/kwz006. Am J Epidemiol. 2019. PMID: 30649166 Free PMC article.

2

Orchestrating a community-developed computational workshop and accompanying training materials.

Davis S, Ramos M, Shepherd L, Turaga N, Geistlinger L, Morgan MT, Haibe-Kains B, Waldron L. Davis S, et al. Among authors: shepherd l. F1000Res. 2018 Oct 17;7:1656. doi: 10.12688/f1000research.16516.1. eCollection 2018. F1000Res. 2018. PMID: 30473781 Free PMC article.

3

Tximeta: Reference sequence checksums for provenance identification in RNA-seq.

Love MI, Soneson C, Hickey PF, Johnson LK, Pierce NT, Shepherd L, Morgan M, Patro R. Love MI, et al. Among authors: shepherd l. PLoS Comput Biol. 2020 Feb 25;16(2):e1007664. doi: 10.1371/journal.pcbi.1007664. eCollection 2020 Feb. PLoS Comput Biol. 2020. PMID: 32097405 Free PMC article.

4

BiocPkgTools: Toolkit for mining the Bioconductor package ecosystem.

Su S, Carey VJ, Shepherd L, Ritchie M, Morgan MT, Davis S. Su S, et al. Among authors: shepherd l. F1000Res. 2019 May 29;8:752. doi: 10.12688/f1000research.19410.1. eCollection 2019. F1000Res. 2019. PMID: 31249680 Free PMC article.

5

The impact of DNA input amount and DNA source on the performance of whole-exome sequencing in cancer epidemiology.

Zhu Q, Hu Q, Shepherd L, Wang J, Wei L, Morrison CD, Conroy JM, Glenn ST, Davis W, Kwan ML, Ergas IJ, Roh JM, Kushi LH, Ambrosone CB, Liu S, Yao S. Zhu Q, et al. Among authors: shepherd l. Cancer Epidemiol Biomarkers Prev. 2015 Aug;24(8):1207-13. doi: 10.1158/1055-9965.EPI-15-0205. Epub 2015 May 19. Cancer Epidemiol Biomarkers Prev. 2015. PMID: 25990554 Free PMC article. Clinical Trial.

6

Trans-ethnic follow-up of breast cancer GWAS hits using the preferential linkage disequilibrium approach.

Zhu Q, Shepherd L, Lunetta KL, Yao S, Liu Q, Hu Q, Haddad SA, Sucheston-Campbell L, Bensen JT, Bandera EV, Rosenberg L, Liu S, Haiman CA, Olshan AF, Palmer JR, Ambrosone CB. Zhu Q, et al. Among authors: shepherd l. Oncotarget. 2016 Dec 13;7(50):83160-83176. doi: 10.18632/oncotarget.13075. Oncotarget. 2016. PMID: 27825120 Free PMC article.

7

Characterization of TAZ domains important for the induction of breast cancer stem cell properties and tumorigenesis.

Li YW, Shen H, Frangou C, Yang N, Guo J, Xu B, Bshara W, Shepherd L, Zhu Q, Wang J, Hu Q, Liu S, Morrison CD, Sun P, Zhang J. Li YW, et al. Among authors: shepherd l. Cell Cycle. 2015;14(1):146-56. doi: 10.4161/15384101.2014.967106. Cell Cycle. 2015. PMID: 25602524 Free PMC article.

8

Sox4 Expression Confers Bladder Cancer Stem Cell Properties and Predicts for Poor Patient Outcome.

Shen H, Blijlevens M, Yang N, Frangou C, Wilson KE, Xu B, Zhang Y, Zhang L, Morrison CD, Shepherd L, Hu Q, Zhu Q, Wang J, Liu S, Zhang J. Shen H, et al. Among authors: shepherd l. Int J Biol Sci. 2015 Nov 1;11(12):1363-75. doi: 10.7150/ijbs.13240. eCollection 2015. Int J Biol Sci. 2015. PMID: 26681916 Free PMC article.

9

iGenomicViewer: R package for visualisation of high dimension genomic data.

Gaile DP, Shepherd LA, Bruno AE, Liu S, Morrison C, Sucheston L, Miecznikowski J. Gaile DP, et al. Among authors: shepherd la. Int J Bioinform Res Appl. 2010;6(6):584-93. doi: 10.1504/IJBRA.2010.038739. Int J Bioinform Res Appl. 2010. PMID: 21354964

10

Comparing Imputation Procedures for Affymetrix Gene Expression Datasets Using MAQC Datasets.

Rao SS, Shepherd LA, Bruno AE, Liu S, Miecznikowski JC. Rao SS, et al. Adv Bioinformatics. 2013;2013:790567. doi: 10.1155/2013/790567. Epub 2013 Oct 9. Adv Bioinformatics. 2013. PMID: 24223587 Free PMC article.

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