Dekker J - Search Results

1

CTCF sites display cell cycle-dependent dynamics in factor binding and nucleosome positioning.

Oomen ME, Hansen AS, Liu Y, Darzacq X, Dekker J. Oomen ME, et al. Among authors: dekker j. Genome Res. 2019 Feb;29(2):236-249. doi: 10.1101/gr.241547.118. Epub 2019 Jan 17. Genome Res. 2019. PMID: 30655336 Free PMC article.

2

The long-range interaction landscape of gene promoters.

Sanyal A, Lajoie BR, Jain G, Dekker J. Sanyal A, et al. Among authors: dekker j. Nature. 2012 Sep 6;489(7414):109-13. doi: 10.1038/nature11279. Nature. 2012. PMID: 22955621 Free PMC article.

3

McCord RP, Nazario-Toole A, Zhang H, Chines PS, Zhan Y, Erdos MR, Collins FS, Dekker J, Cao K. McCord RP, et al. Among authors: dekker j. Genome Res. 2013 Feb;23(2):260-9. doi: 10.1101/gr.138032.112. Epub 2012 Nov 14. Genome Res. 2013. PMID: 23152449 Free PMC article.

4

Cohesin-based chromatin interactions enable regulated gene expression within preexisting architectural compartments.

Seitan VC, Faure AJ, Zhan Y, McCord RP, Lajoie BR, Ing-Simmons E, Lenhard B, Giorgetti L, Heard E, Fisher AG, Flicek P, Dekker J, Merkenschlager M. Seitan VC, et al. Among authors: dekker j. Genome Res. 2013 Dec;23(12):2066-77. doi: 10.1101/gr.161620.113. Epub 2013 Sep 3. Genome Res. 2013. PMID: 24002784 Free PMC article.

5

Spatial enhancer clustering and regulation of enhancer-proximal genes by cohesin.

Ing-Simmons E, Seitan VC, Faure AJ, Flicek P, Carroll T, Dekker J, Fisher AG, Lenhard B, Merkenschlager M. Ing-Simmons E, et al. Among authors: dekker j. Genome Res. 2015 Apr;25(4):504-13. doi: 10.1101/gr.184986.114. Epub 2015 Feb 12. Genome Res. 2015. PMID: 25677180 Free PMC article.

6

SMARCA4 regulates gene expression and higher-order chromatin structure in proliferating mammary epithelial cells.

Barutcu AR, Lajoie BR, Fritz AJ, McCord RP, Nickerson JA, van Wijnen AJ, Lian JB, Stein JL, Dekker J, Stein GS, Imbalzano AN. Barutcu AR, et al. Among authors: dekker j. Genome Res. 2016 Sep;26(9):1188-201. doi: 10.1101/gr.201624.115. Epub 2016 Jul 19. Genome Res. 2016. PMID: 27435934 Free PMC article.

7

CTCF-mediated topological boundaries during development foster appropriate gene regulation.

Narendra V, Bulajić M, Dekker J, Mazzoni EO, Reinberg D. Narendra V, et al. Among authors: dekker j. Genes Dev. 2016 Dec 15;30(24):2657-2662. doi: 10.1101/gad.288324.116. Genes Dev. 2016. PMID: 28087711 Free PMC article.

8

Epigenetic characteristics of the mitotic chromosome in 1D and 3D.

Oomen ME, Dekker J. Oomen ME, et al. Among authors: dekker j. Crit Rev Biochem Mol Biol. 2017 Apr;52(2):185-204. doi: 10.1080/10409238.2017.1287160. Epub 2017 Feb 15. Crit Rev Biochem Mol Biol. 2017. PMID: 28228067 Free PMC article. Review.

9

Targeted Degradation of CTCF Decouples Local Insulation of Chromosome Domains from Genomic Compartmentalization.

Nora EP, Goloborodko A, Valton AL, Gibcus JH, Uebersohn A, Abdennur N, Dekker J, Mirny LA, Bruneau BG. Nora EP, et al. Among authors: dekker j. Cell. 2017 May 18;169(5):930-944.e22. doi: 10.1016/j.cell.2017.05.004. Cell. 2017. PMID: 28525758 Free PMC article.

10

Single-allele chromatin interactions identify regulatory hubs in dynamic compartmentalized domains.

Oudelaar AM, Davies JOJ, Hanssen LLP, Telenius JM, Schwessinger R, Liu Y, Brown JM, Downes DJ, Chiariello AM, Bianco S, Nicodemi M, Buckle VJ, Dekker J, Higgs DR, Hughes JR. Oudelaar AM, et al. Among authors: dekker j. Nat Genet. 2018 Dec;50(12):1744-1751. doi: 10.1038/s41588-018-0253-2. Epub 2018 Oct 29. Nat Genet. 2018. PMID: 30374068 Free PMC article.

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