Tidor B - Search Results

1

Machine Learning Identifies Chemical Characteristics That Promote Enzyme Catalysis.

Bonk BM, Weis JW, Tidor B. Bonk BM, et al. Among authors: tidor b. J Am Chem Soc. 2019 Mar 6;141(9):4108-4118. doi: 10.1021/jacs.8b13879. Epub 2019 Feb 21. J Am Chem Soc. 2019. PMID: 30761897 Free PMC article.

2

HIV-1 protease inhibitors from inverse design in the substrate envelope exhibit subnanomolar binding to drug-resistant variants.

Altman MD, Ali A, Reddy GS, Nalam MN, Anjum SG, Cao H, Chellappan S, Kairys V, Fernandes MX, Gilson MK, Schiffer CA, Rana TM, Tidor B. Altman MD, et al. Among authors: tidor b. J Am Chem Soc. 2008 May 14;130(19):6099-113. doi: 10.1021/ja076558p. Epub 2008 Apr 16. J Am Chem Soc. 2008. PMID: 18412349 Free PMC article.

3

Rational design of thiolase substrate specificity for metabolic engineering applications.

Bonk BM, Tarasova Y, Hicks MA, Tidor B, Prather KLJ. Bonk BM, et al. Among authors: tidor b. Biotechnol Bioeng. 2018 Sep;115(9):2167-2182. doi: 10.1002/bit.26737. Epub 2018 Jun 29. Biotechnol Bioeng. 2018. PMID: 29877597 Free PMC article.

4

Preferential heterodimer formation via undercompensated electrostatic interactions.

Hendsch ZS, Nohaile MJ, Sauer RT, Tidor B. Hendsch ZS, et al. Among authors: tidor b. J Am Chem Soc. 2001 Feb 14;123(6):1264-5. doi: 10.1021/ja0032273. J Am Chem Soc. 2001. PMID: 11456695 No abstract available.

5

Limitations of quantitative gene regulation models: a case study.

Kim PM, Tidor B. Kim PM, et al. Among authors: tidor b. Genome Res. 2003 Nov;13(11):2391-5. doi: 10.1101/gr.1207003. Genome Res. 2003. PMID: 14597653 Free PMC article.

6

Numerical integration techniques for curved-element discretizations of molecule-solvent interfaces.

Bardhan JP, Altman MD, Willis DJ, Lippow SM, Tidor B, White JK. Bardhan JP, et al. Among authors: tidor b. J Chem Phys. 2007 Jul 7;127(1):014701. doi: 10.1063/1.2743423. J Chem Phys. 2007. PMID: 17627358 Free PMC article.

7

Novel method for probing the specificity binding profile of ligands: applications to HIV protease.

Sherman W, Tidor B. Sherman W, et al. Among authors: tidor b. Chem Biol Drug Des. 2008 May;71(5):387-407. doi: 10.1111/j.1747-0285.2008.00659.x. Epub 2008 Mar 31. Chem Biol Drug Des. 2008. PMID: 18384529 Free PMC article.

8

Rotamer optimization for protein design through MAP estimation and problem-size reduction.

Hong EJ, Lippow SM, Tidor B, Lozano-Pérez T. Hong EJ, et al. Among authors: tidor b. J Comput Chem. 2009 Sep;30(12):1923-45. doi: 10.1002/jcc.21188. J Comput Chem. 2009. PMID: 19123203 Free PMC article.

9

Charge Optimization Theory for Induced-Fit Ligands.

Shen Y, Gilson MK, Tidor B. Shen Y, et al. Among authors: tidor b. J Chem Theory Comput. 2012 Nov 13;8(11):4580-4592. doi: 10.1021/ct200931c. Epub 2012 Jun 17. J Chem Theory Comput. 2012. PMID: 23162383 Free PMC article.

10

Testing the substrate-envelope hypothesis with designed pairs of compounds.

Shen Y, Altman MD, Ali A, Nalam MN, Cao H, Rana TM, Schiffer CA, Tidor B. Shen Y, et al. Among authors: tidor b. ACS Chem Biol. 2013 Nov 15;8(11):2433-41. doi: 10.1021/cb400468c. Epub 2013 Sep 26. ACS Chem Biol. 2013. PMID: 23952265 Free PMC article.

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